Subroutine Coverage
| blib/lib/Bio/Phylo/Models/Substitution/Dna.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
21 |
37 |
56.7
|
| pod |
24 |
24 |
100.0
|
| line |
count |
pod |
subroutine |
|
2
|
14 |
n/a |
BEGIN |
|
3
|
14 |
n/a |
BEGIN |
|
4
|
14 |
n/a |
BEGIN |
|
5
|
14 |
n/a |
BEGIN |
|
6
|
14 |
n/a |
BEGIN |
|
8
|
14 |
n/a |
BEGIN |
|
10
|
0 |
n/a |
_INDEX_OF_ |
|
11
|
0 |
n/a |
_BASE_AT_ |
|
85
|
1 |
Yes |
new |
|
112
|
0 |
Yes |
get_catrates |
|
128
|
0 |
Yes |
get_nst |
|
147
|
0 |
Yes |
get_rate |
|
176
|
0 |
Yes |
get_nstates |
|
193
|
2 |
Yes |
get_ncat |
|
208
|
0 |
Yes |
get_catweights |
|
223
|
1 |
Yes |
get_kappa |
|
238
|
2 |
Yes |
get_alpha |
|
253
|
0 |
Yes |
get_mu |
|
268
|
2 |
Yes |
get_pinvar |
|
285
|
0 |
Yes |
get_pi |
|
309
|
1 |
Yes |
get_median |
|
325
|
1 |
Yes |
set_rate |
|
349
|
1 |
Yes |
set_ncat |
|
368
|
0 |
Yes |
set_catweights |
|
387
|
1 |
Yes |
set_kappa |
|
406
|
1 |
Yes |
set_alpha |
|
425
|
0 |
Yes |
set_mu |
|
444
|
1 |
Yes |
set_pinvar |
|
468
|
1 |
Yes |
set_pi |
|
492
|
1 |
Yes |
set_median |
|
519
|
0 |
Yes |
modeltest |
|
689
|
1 |
Yes |
to_string |
|
706
|
1 |
n/a |
_to_garli_string |
|
722
|
0 |
n/a |
_to_mrbayes_string |
|
774
|
0 |
n/a |
_to_phyml_string |
|
807
|
0 |
n/a |
_to_paup_string |
|
842
|
0 |
n/a |
_type |