Subroutine Coverage
| blib/lib/Bio/Phylo/Forest/NodeRole.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
69 |
100 |
69.0
|
| pod |
58 |
77 |
75.3
|
| line |
count |
pod |
subroutine |
|
2
|
34 |
n/a |
BEGIN |
|
3
|
34 |
n/a |
BEGIN |
|
4
|
34 |
n/a |
BEGIN |
|
5
|
34 |
n/a |
BEGIN |
|
6
|
34 |
n/a |
BEGIN |
|
7
|
34 |
n/a |
BEGIN |
|
8
|
34 |
n/a |
BEGIN |
|
9
|
34 |
n/a |
BEGIN |
|
10
|
34 |
n/a |
BEGIN |
|
11
|
34 |
n/a |
BEGIN |
|
12
|
34 |
n/a |
BEGIN |
|
13
|
34 |
n/a |
BEGIN |
|
112
|
8251 |
Yes |
new |
|
136
|
0 |
No |
add_Descendent |
|
136
|
0 |
No |
add_tag_value |
|
136
|
0 |
No |
ancestor |
|
136
|
0 |
No |
bootstrap |
|
136
|
0 |
No |
branch_length |
|
136
|
0 |
No |
depth |
|
136
|
0 |
No |
descendent_count |
|
136
|
0 |
No |
description |
|
136
|
0 |
No |
each_Descendent |
|
136
|
0 |
No |
get_all_Descendents |
|
136
|
0 |
No |
get_all_tags |
|
136
|
0 |
No |
get_tag_values |
|
136
|
0 |
No |
has_tag |
|
136
|
0 |
No |
height |
|
136
|
0 |
No |
id |
|
136
|
0 |
No |
id_output |
|
136
|
0 |
No |
internal_id |
|
136
|
0 |
No |
invalidate_height |
|
136
|
0 |
No |
remove_all_tags |
|
136
|
0 |
n/a |
remove_tag |
|
140
|
34 |
n/a |
BEGIN |
|
170
|
0 |
Yes |
new_from_bioperl |
|
212
|
356 |
Yes |
prune_child |
|
235
|
114 |
Yes |
collapse |
|
288
|
336 |
Yes |
set_first_daughter |
|
310
|
336 |
Yes |
set_last_daughter |
|
332
|
237 |
Yes |
set_previous_sister |
|
368
|
237 |
Yes |
set_next_sister |
|
400
|
0 |
Yes |
set_node_below |
|
441
|
9 |
Yes |
set_root_below |
|
544
|
59451 |
Yes |
get_first_daughter |
|
561
|
22 |
Yes |
get_last_daughter |
|
578
|
230 |
Yes |
get_previous_sister |
|
605
|
8429 |
Yes |
get_next_sister |
|
634
|
71 |
Yes |
get_ancestors |
|
663
|
3 |
Yes |
get_root |
|
688
|
3 |
Yes |
get_farthest_node |
|
724
|
2 |
Yes |
get_sisters |
|
748
|
59478 |
Yes |
get_child |
|
771
|
759 |
Yes |
get_descendants |
|
804
|
11489 |
n/a |
_desc |
|
832
|
749 |
Yes |
get_terminals |
|
857
|
1 |
Yes |
get_internals |
|
886
|
40 |
Yes |
get_mrca |
|
919
|
4 |
Yes |
get_leftmost_terminal |
|
949
|
4 |
Yes |
get_rightmost_terminal |
|
977
|
0 |
Yes |
get_subtree |
|
981
|
0 |
n/a |
__ANON__ |
|
995
|
0 |
n/a |
__ANON__ |
|
1027
|
1904 |
Yes |
get_subtrees |
|
1098
|
48198 |
Yes |
is_terminal |
|
1118
|
147 |
Yes |
is_internal |
|
1137
|
9 |
Yes |
is_preterminal |
|
1162
|
0 |
Yes |
is_first |
|
1182
|
0 |
Yes |
is_last |
|
1201
|
717 |
Yes |
is_root |
|
1222
|
8310 |
Yes |
is_descendant_of |
|
1255
|
8309 |
Yes |
is_ancestor_of |
|
1282
|
4 |
Yes |
is_sister_of |
|
1314
|
8615 |
Yes |
is_child_of |
|
1342
|
2 |
Yes |
is_outgroup_of |
|
1374
|
17141 |
Yes |
can_contain |
|
1404
|
81 |
Yes |
calc_path_to_root |
|
1438
|
2 |
Yes |
calc_nodes_to_root |
|
1469
|
1 |
Yes |
calc_max_nodes_to_tips |
|
1501
|
2 |
Yes |
calc_min_nodes_to_tips |
|
1533
|
2 |
Yes |
calc_max_path_to_tips |
|
1568
|
2 |
Yes |
calc_min_path_to_tips |
|
1606
|
19 |
Yes |
calc_patristic_distance |
|
1643
|
9 |
Yes |
calc_nodal_distance |
|
1672
|
236 |
Yes |
calc_terminals |
|
1674
|
1172 |
n/a |
__ANON__ |
|
1696
|
358 |
Yes |
calc_rankprob_tipcounts |
|
1759
|
76 |
Yes |
calc_rankprob |
|
1815
|
8 |
Yes |
calc_expected_rank |
|
1845
|
56 |
Yes |
calc_rankprob_compare |
|
1956
|
145 |
Yes |
visit_depth_first |
|
1984
|
5162 |
n/a |
_visit_depth_first |
|
2059
|
0 |
Yes |
visit_breadth_first |
|
2074
|
0 |
n/a |
_visit_breadth_first |
|
2113
|
360 |
Yes |
visit_level_order |
|
2150
|
0 |
Yes |
to_xml |
|
2214
|
2966 |
Yes |
to_newick |
|
2336
|
0 |
Yes |
to_dom |
|
2403
|
52258 |
n/a |
_type |
|
2404
|
2 |
n/a |
_tag |
|
2419
|
16836 |
n/a |
_container |