| blib/lib/Bio/NEXUS/Node.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 53 | 70 | 75.7 |
| pod | 46 | 46 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 42 | 34 | n/a | BEGIN |
| 43 | 34 | n/a | BEGIN |
| 44 | 34 | n/a | BEGIN |
| 45 | 34 | n/a | BEGIN |
| 46 | 34 | n/a | BEGIN |
| 47 | 34 | n/a | BEGIN |
| 51 | 34 | n/a | BEGIN |
| 59 | 34 | n/a | BEGIN |
| 60 | 34 | n/a | BEGIN |
| 77 | 1073 | Yes | new |
| 94 | 36 | Yes | clone |
| 121 | 0 | Yes | get_seq |
| 136 | 0 | Yes | set_seq |
| 151 | 1028 | Yes | set_parent_node |
| 166 | 1020 | Yes | get_parent |
| 185 | 701 | Yes | set_length |
| 200 | 2769 | Yes | get_length |
| 219 | 34 | Yes | get_total_length |
| 238 | 44 | Yes | set_support_value |
| 260 | 1102 | Yes | get_support_value |
| 278 | 0 | n/a | _set_xcoord |
| 295 | 0 | n/a | _get_xcoord |
| 316 | 0 | n/a | _set_ycoord |
| 333 | 0 | n/a | _get_ycoord |
| 348 | 1761 | Yes | set_name |
| 363 | 7034 | Yes | get_name |
| 378 | 7678 | Yes | is_otu |
| 393 | 1020 | Yes | add_child |
| 408 | 6 | Yes | get_distance |
| 466 | 1159 | Yes | to_string |
| 523 | 36 | Yes | set_children |
| 538 | 5647 | Yes | get_children |
| 556 | 3192 | Yes | walk |
| 593 | 0 | Yes | get_otus |
| 612 | 0 | n/a | _walk_otus |
| 638 | 0 | Yes | printall |
| 675 | 34 | n/a | BEGIN |
| 676 | 1525 | n/a | _parse_newick |
| 736 | 3457 | n/a | _parse_comment |
| 775 | 676 | n/a | _parse_length |
| 817 | 42 | n/a | _parse_support_value |
| 841 | 196 | Yes | find |
| 863 | 5 | Yes | prune |
| 933 | 216 | Yes | equals |
| 1011 | 204 | n/a | _same_attributes |
| 1054 | 2 | Yes | get_siblings |
| 1077 | 2 | Yes | is_sibling |
| 1105 | 0 | n/a | _rearrange |
| 1135 | 982 | Yes | adopt |
| 1159 | 0 | Yes | combine |
| 1186 | 0 | n/a | _assign_otu_ycoord |
| 1213 | 0 | n/a | _assign_inode_ycoord |
| 1237 | 1064 | Yes | set_depth |
| 1256 | 57 | Yes | get_depth |
| 1271 | 445 | Yes | find_lengths |
| 1291 | 2 | Yes | mrca |
| 1335 | 0 | Yes | get_mrca_of_otus |
| 1365 | 0 | n/a | AUTOLOAD |
| 1416 | 3 | Yes | contains_nhx_tag |
| 1434 | 1 | Yes | get_nhx_tags |
| 1454 | 1106 | Yes | get_nhx_values |
| 1477 | 47 | Yes | set_nhx_tag |
| 1505 | 3 | Yes | add_nhx_tag_value |
| 1524 | 0 | Yes | delete_nhx_tag |
| 1542 | 0 | Yes | delete_all_nhx_tags |
| 1558 | 68 | Yes | nhx_command_to_string |
| 1578 | 8 | Yes | clone_nhx_command |
| 1599 | 1 | Yes | check_nhx_tag_value_present |
| 1618 | 2 | Yes | set_nhx_obj |
| 1633 | 717 | Yes | get_nhx_obj |