Subroutine Coverage
| blib/lib/Bio/MUST/Core/Seq.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
33 |
37 |
89.1
|
| pod |
24 |
27 |
88.8
|
| line |
count |
pod |
subroutine |
|
7
|
17 |
n/a |
BEGIN |
|
8
|
17 |
n/a |
BEGIN |
|
9
|
17 |
n/a |
BEGIN |
|
13
|
17 |
n/a |
BEGIN |
|
14
|
17 |
n/a |
BEGIN |
|
16
|
17 |
n/a |
BEGIN |
|
18
|
17 |
n/a |
BEGIN |
|
19
|
17 |
n/a |
BEGIN |
|
20
|
17 |
n/a |
BEGIN |
|
51
|
512 |
Yes |
clone |
|
64
|
753 |
Yes |
is_protein |
|
71
|
11 |
Yes |
is_rna |
|
78
|
8599 |
Yes |
is_aligned |
|
85
|
36 |
Yes |
is_subseq_of |
|
97
|
36 |
Yes |
is_superseq_of |
|
109
|
11 |
Yes |
first_site |
|
117
|
5 |
Yes |
uc |
|
124
|
0 |
No |
uc_seq |
|
130
|
5 |
Yes |
recode |
|
148
|
0 |
No |
recode_seq |
|
156
|
38 |
Yes |
degap |
|
164
|
181 |
Yes |
gapify |
|
235
|
3069 |
Yes |
spacify |
|
253
|
3068 |
Yes |
trim |
|
261
|
3068 |
Yes |
pad_to |
|
270
|
3 |
Yes |
clear_new_tag |
|
282
|
4203 |
Yes |
all_states |
|
288
|
2002847 |
Yes |
state_at |
|
293
|
0 |
Yes |
delete_site |
|
301
|
40 |
Yes |
is_missing |
|
312
|
139 |
Yes |
is_gap |
|
337
|
361 |
Yes |
nomiss_seq_len |
|
371
|
1 |
Yes |
spliced_seq |
|
386
|
518 |
Yes |
raw_str |
|
391
|
0 |
No |
raw_seq |
|
397
|
113 |
Yes |
wrapped_str |
|
436
|
554 |
n/a |
_strip_gaps |