Condition Coverage

blib/lib/Bio/MUST/Core/Taxonomy.pm
Criterion Covered Total %
condition 0 73 0.0


and 3 conditions

line !l l&&!r l&&r condition
415 0 0 0 defined $strain_key and length $strain_key
485 0 0 0 $_[0] =~ / [^A-Za-z0-9] /msx and $_[1] =~ / [A-Za-z0-9] /msx
0 0 0 $_[0] =~ / [A-Za-z0-9] /msx and $_[1] =~ / [^A-Za-z0-9] /msx
979 0 0 0 not $is_named and $rank >= $target_for{'name'}
1405 0 0 0 $got_taxon and $exp_taxon
1519 0 0 0 -r $gcanamefile and -r $gcanodefile
1539 0 0 0 -r file($tax_dir, 'names.dmp') and -r file($tax_dir, 'nodes.dmp')
1803 0 0 0 -r $new_arcfile and -r $new_bacfile
1915 0 0 0 -r $name_file and -r $node_file
1919 0 0 0 -r $gcanamefile and -r $gcanodefile

or 2 conditions

line l !l condition
753 0 0 $seq_id->full_id || q['']
852 0 0 $_->[$i] // ''
858 0 0 $_->[$i] // ''
935 0 0 shift() // {}
1142 0 0 shift() // {}
1144 0 0 $args->{'column'} // 1
1192 0 0 $family_for{$abbr_id} // ''
1448 0 0 shift() // {}
1465 0 0 shift() // {}
1467 0 0 $args->{'gi_mapper'} // 0
1661 0 0 $rank_for{$name_for{$accession}} // 'no rank'
1889 0 0 $tree_ref->{$taxon_id}{'children'} //= {}
1957 0 0 $tree_ref->{'uniq_name'} // ''
1958 0 0 $tree_ref->{'gca'} // []

or 3 conditions

line l !l&&r !l&&!r condition
485 0 0 0 $_[0] =~ / [^A-Za-z0-9] /msx and $_[1] =~ / [A-Za-z0-9] /msx or $_[0] =~ / [A-Za-z0-9] /msx and $_[1] =~ / [^A-Za-z0-9] /msx
490 0 0 0 $_[0] =~ / [A-Za-z0-9] /msx or $_[1] =~ / [A-Za-z0-9] /msx
1145 0 0 0 $args->{'separator'} // qr/\t/msx
1157 0 0 0 $line =~ /$Bio::MUST::Core::Taxonomy::EMPTY_LINE/ or $line =~ /$Bio::MUST::Core::Taxonomy::COMMENT_LINE/
1609 0 0 0 $line =~ /$Bio::MUST::Core::Taxonomy::EMPTY_LINE/ or $line =~ /$Bio::MUST::Core::Taxonomy::COMMENT_LINE/