| blib/lib/Bio/MUST/Apps/FortyTwo/OrgProcessor.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 64 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 124 | 0 | 0 | 0 | $query_seqs->type eq 'prot' and $blastdb->type eq 'nucl' |
| 181 | 0 | 0 | 0 | $homologous_seqs->type eq 'nucl' and $blastdb->type eq 'prot' |
| 234 | 0 | 0 | 0 | $orthologous_seqs->type eq 'nucl' and $blastdb->type eq 'prot' |
| 270 | 0 | 0 | 0 | $orthologous_seqs->type eq 'nucl' and $blastdb->type eq 'prot' |
| 325 | 0 | 0 | 0 | $orthologous_seqs->type eq 'nucl' and $blastdb->type eq 'prot' |
| 473 | 0 | 0 | 0 | $rp->aligner_mode eq 'exoblast' and $failure |
| 504 | 0 | 0 | 0 | $ap->query_seqs->type eq 'nucl' and $blastdb->type eq 'nucl' |
| 0 | 0 | 0 | $ap->query_seqs->type eq 'nucl' and $blastdb->type eq 'nucl' and $hsp->hit_strand == -1 | |
| 619 | 0 | 0 | 0 | not defined $end and defined $start |
| 0 | 0 | 0 | not defined $end and defined $start and $start =~ /\A \+\d+ \z/msx | |
| 773 | 0 | 0 | 0 | $self->_tax_filter and $rp->tol_check eq 'off' |
| line | l | !l | condition |
|---|---|---|---|
| 112 | 0 | 0 | $rp->blast_args_for('homologues') // {} |
| 171 | 0 | 0 | $rp->blast_args_for('orthologues') // {} |
| 229 | 0 | 0 | $rp->blast_args_for('templates') // {} |
| 265 | 0 | 0 | $rp->blast_args_for('templates') // {} |
| 319 | 0 | 0 | $rp->blast_args_for('templates') // {} |
| 633 | 0 | 0 | $self->para_score_for($transcript_acc) // 0 |
| 642 | 0 | 0 | $self->tol_score_for($transcript_acc) // 0 |
| 659 | 0 | 0 | $template_ids[0]->family // '' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 473 | 0 | 0 | 0 | $rp->aligner_mode eq 'blast' or $rp->aligner_mode eq 'exoblast' and $failure |
| 679 | 0 | 0 | 0 | $rp->tax_reports eq 'on' or $self->_tax_filter |
| 735 | 0 | 0 | 0 | $best_score ||= $score |
| 779 | 0 | 0 | 0 | $_ // () |
| 801 | 0 | 0 | 0 | $org =~ /$Bio::MUST::Apps::FortyTwo::OrgProcessor::PKEYONLY/ || $org =~ /$Bio::MUST::Apps::FortyTwo::OrgProcessor::GCAONLY/ |