| line |
true |
false |
branch |
|
25
|
0 |
0 |
$start <= $end ? :
|
|
63
|
0 |
0 |
defined $tollerance ? :
|
|
84
|
0 |
0 |
if ($hit->{'source_start'} >= $bin->{'start'} and $hit->{'source_end'} <= $bin->{'end'}) { }
|
|
|
0 |
0 |
elsif ($hit->{'source_start'} <= $bin->{'start'} and $hit->{'source_end'} >= $bin->{'end'}) { }
|
|
101
|
0 |
0 |
unless ($found_a_bin)
|
|
130
|
0 |
0 |
if ($overlap_prop > 0.9) { }
|
|
160
|
0 |
0 |
$Bio::MLST::Blast::BlastN::a->{'percentage_identity'} > $Bio::MLST::Blast::BlastN::b->{'percentage_identity'} ? :
|
|
168
|
0 |
0 |
if $word_size < 11
|
|
193
|
0 |
0 |
$Bio::MLST::Blast::BlastN::a->{'percentage_identity'} > $Bio::MLST::Blast::BlastN::b->{'percentage_identity'} ? :
|
|
195
|
0 |
0 |
if (defined $top_hit) { }
|
|
204
|
0 |
0 |
if (scalar @best_in_groups > 1)
|