Condition Coverage

lib/Bio/Graphics/FeatureFile.pm
Criterion Covered Total %
condition 9 199 4.5


and 3 conditions

line !l l&&!r l&&r condition
376 1 0 0 exists $args{-'map_coords'} and ref $args{-'map_coords'} eq 'CODE'
433 0 0 0 $has_libs && $args{-'file'}
436 0 0 0 -e $cachefile and (stat _)[9] >= $self->file_mtime($args{-'file'})
590 0 0 0 $panel and UNIVERSAL::isa($panel, 'Bio::Graphics::Panel')
617 0 0 0 $options and ref $options eq 'HASH'
640 0 0 0 defined $selector and not &$selector($self, $label)
686 0 1 0 $self->{'stat'} and @{$self->{'stat'};}
701 0 0 0 $feat->start <= $max && $feat->end >= $min
847 0 3 0 $line =~ /^[\w:\s]+=/ and $self->{'current_config'}
849 0 0 0 $line =~ /^\s+(.+)/ and $self->{'current_tag'}
863 4 0 0 /^\s+(.+)/ and $self->{'current_tag'}
923 0 0 0 /^\s+/ and length $tokens[0]
925 0 0 0 @tokens >= 8 and $tokens[3] =~ /^-?\d+$/
0 0 0 @tokens >= 8 and $tokens[3] =~ /^-?\d+$/ and $tokens[4] =~ /^-?\d+$/
1143 0 0 0 @_ == 2 and defined $_[0]
0 0 0 @_ == 2 and defined $_[0] and exists $$config{$_[0]}
1225 0 0 0 $setting =~ /^sub\s*(\(\$\$\))*\s*\{/ and my $context = $self->{'safe_context'}
1285 0 0 0 $self->{'safe'} and not $d
1306 0 0 0 $safe and not $self->{'safe_content'}
1456 0 0 0 $Bio::Root::Version::VERSION >= 1.0069 and $Bio::Root::Version::VERSION <= 1.006901
1515 0 0 0 $_[0] && $_[0] =~ /^-/
1518 0 0 0 $types and not ref $types
1519 0 0 0 $types && @$types
1704 0 0 0 defined $self->{'min'} and defined $self->{'max'}
1817 0 0 0 defined $start and defined $stop
1823 0 0 0 $options and ref $options eq 'HASH'
1904 0 0 0 ref $linkrule and ref $linkrule eq 'CODE'
1969 0 0 0 $feature->can('target') and my $target = $feature->target

or 2 conditions

line l !l condition
620 0 0 $options ||= 0
637 0 0 $self->setting($label, 'feature') || ''
865 0 0 $self->{'current_config'} ||= 'general'
883 3 0 $self->{'current_config'} ||= 'general'
1806 0 0 $self->setting('general', 'pixels') || $self->setting('general', 'width') || 600
1902 0 0 $panel ||= 'Bio::Graphics::Panel'
1914 0 0 $linkrule ||= ''
1933 0 0 ($n = $seq_id) && "$n" || ''
0 0 ($n = $feature->display_name) && "$n" || ''
0 0 eval { do { $feature->class } } || ''
0 0 eval { do { $feature->method } } || $feature->primary_tag || ''
0 0 eval { do { $feature->method } } || $feature->primary_tag || ''
0 0 eval { do { $feature->source } } || $feature->source_tag || ''
0 0 eval { do { $feature->seq_id } } || eval { do { $feature->location->seq_id } } || ''
0 0 $feature->start || ''
0 0 $feature->end || ''
0 0 $feature->end || ''
0 0 $panel->start || ''
0 0 $panel->end || ''
0 0 $feature->length || 0
0 0 eval { do { join '', $feature->notes } } || ''
0 0 eval { do { $feature->feature_id } } || eval { do { $feature->primary_id } } || ''
1977 0 0 $feature->start || '?'
0 0 $feature->end || '?'
2004 0 0 $feature || ''
2027 0 0 shift() || 'general'

or 3 conditions

line l !l&&r !l&&!r condition
603 0 0 0 $self->setting($_, 'feature') || $_
607 0 0 0 exists $lc_types{lc $_} || exists $lc_types{lc $_->method}
660 0 0 0 $features[0]->type || $label
861 0 0 4 /\#[0-9a-f]{6,8}\s*$/i or /\w+\#\w+/
0 0 4 /\#[0-9a-f]{6,8}\s*$/i or /\w+\#\w+/ or /\w+\"*\s*\#\d+$/
903 0 0 1 $self->{'loader'} ||= $self->_make_loader($line)
947 0 0 1 $self->{'db'} ||= 'Bio::DB::SeqFeature::Store'->new(-'adaptor', 'memory', -'write', 1)
1017 0 0 0 $cc eq 'general' or $self->{'config'}{$cc}
1553 0 0 0 $_[0] =~ /^\+/ or $_[0] > 0
1554 0 0 0 $_[0] =~ /^\-/ or $_[0] < 0
1715 0 0 0 not defined $min or $min > $f->start
1716 0 0 0 not defined $max or $max < $f->start
1794 0 0 0 $self->{'gff'} ||= 'Bio::DB::GFF'->new(-'adaptor', 'memory')
1853 0 0 0 $self->{'m_time'} || $self->{'stat'}[9]
1916 0 0 0 $seq_id ||= $feature->seq_id
1948 0 0 0 $linkrule ||= $self->setting($label, 'link')
1949 0 0 0 $linkrule ||= $self->setting('general', 'link')
1961 0 0 0 $linkrule ||= $self->setting('general', 'title')
1966 0 0 0 eval { do { $feature->method } } || $feature->primary_tag
1993 0 0 0 $self->{'_type2label'} ||= $self->invert_types
2003 0 0 0 $config->{$label}{'feature'} || $label