| line |
true |
false |
branch |
|
365
|
0 |
1 |
if defined $param{'-format'} |
|
367
|
0 |
1 |
if (defined $param{'-query'} and defined $param{'-filter'}) { } |
|
|
1 |
0 |
elsif (defined $param{'-query'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-filter'}) { } |
|
392
|
0 |
1 |
if defined $param{'-format'} |
|
394
|
1 |
0 |
if (defined $param{'-query'} and defined $param{'-filter'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-filter'}) { } |
|
419
|
0 |
0 |
if defined $param{'-format'} |
|
421
|
0 |
0 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
442
|
0 |
1 |
if defined $param{'-format'} |
|
444
|
0 |
1 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
1 |
elsif (defined $param{'-query'}) { } |
|
465
|
0 |
1 |
if defined $param{'-format'} |
|
467
|
1 |
0 |
if (defined $param{'-query'} and $param{'-retrieve'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-query'}) { } |
|
489
|
0 |
0 |
if (defined $param{'-chromosome'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-evidence'}) { } |
|
494
|
0 |
0 |
if ($chrom eq 'all') { } |
|
502
|
0 |
0 |
if ($param{'-evidence'} eq 'protein_level') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'transcript_level') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'homology') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'predicted') { } |
|
|
0 |
0 |
elsif ($param{'-evidence'} eq 'uncertain') { } |
|
527
|
0 |
0 |
if (defined $param{'-chromosome'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-phospho'}) { } |
|
|
0 |
0 |
elsif (defined $param{'-nacetyl'}) { } |
|
551
|
0 |
0 |
if (defined $param{'-map'}) |
|
554
|
0 |
0 |
if ($db eq 'ensembl_gene') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_protein') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_unmapped') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_transcript') { } |
|
|
0 |
0 |
elsif ($db eq 'ensembl_transcript_unmapped') { } |
|
|
0 |
0 |
elsif ($db eq 'geneid') { } |
|
|
0 |
0 |
elsif ($db eq 'hgnc') { } |
|
|
0 |
0 |
elsif ($db eq 'mgi') { } |
|
|
0 |
0 |
elsif ($db eq 'refseq') { } |
|
590
|
0 |
0 |
if (defined $param{'-chromosome'}) |
|
600
|
0 |
0 |
if ($prot =~ /^[A-Za-z|0-9\-]+\s+NX/) |