| blib/lib/Bio/CUA/CUB/Calculator.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 6 | 36 | 16.6 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 269 | 1508 | 26 | 26 | $nonDegCodons{$codon} and $type =~ /cai/i |
| 272 | 13 | 0 | 0 | $self->debug and $self->no_atg ? $codon ne 'ATG' : 1 |
| 318 | 0 | 0 | 0 | not $withNonDeg and $nonDegCodons{$codon} |
| 709 | 0 | 0 | 0 | $pos > 0 and $pos < 4 |
| 816 | 0 | 0 | 0 | $baseComp and ref $baseComp eq 'ARRAY' |
| line | l | !l | condition |
|---|---|---|---|
| 323 | 0 | 0 | $total || 1 |
| 561 | 0 | 0 | $$codonList{$_} || 0 |
| 659 | 0 | 0 | $$knownF{'2'} || 0.5 |
| 660 | 0 | 0 | $$knownF{'4'} || 0.25 |
| 750 | 0 | 0 | $bases{$_} || 0 |
| 751 | 0 | 0 | $bases{$_} || 0 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 162 | 0 | 0 | 0 | ref $val eq 'ARRAY' or $val =~ /^seq/ |
| 546 | 4 | 0 | 464 | $AAcnt < $minTotal or $AAcnt < 2 |
| 832 | 0 | 0 | 0 | $$baseComp[$_] || $pseudoCnt |