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package PDL::IO::XLSX; |
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353567
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use 5.010; |
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7
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3
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9
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use strict; |
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48
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9
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use warnings; |
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8
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215
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5
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6
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require Exporter; |
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our @ISA = qw(Exporter); |
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our @EXPORT_OK = qw(rxlsx1D rxlsx2D wxlsx1D wxlsx2D); |
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our %EXPORT_TAGS = (all => \@EXPORT_OK); |
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our $VERSION = '0.004'; |
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use Config; |
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118
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50
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10
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use constant DEBUG => $ENV{PDL_IO_XLSX_DEBUG} ? 1 : 0; |
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15
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3
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508
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use PDL; |
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10
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156121
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use PDL::IO::XLSX::Writer; |
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621
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18
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1242
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use PDL::IO::XLSX::Reader; |
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0
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0
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19
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use Scalar::Util qw(looks_like_number blessed); |
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21
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use Carp; |
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$Carp::Internal{ (__PACKAGE__) }++; |
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24
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sub import { |
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my $package = shift; |
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{ |
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no strict 'refs'; |
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*{'PDL::wxlsx2D'} = \&wxlsx2D if grep { /^(:all|wxlsx2D)$/ } @_; |
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*{'PDL::wxlsx1D'} = \&wxlsx1D if grep { /^(:all|wxlsx1D)$/ } @_; |
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} |
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__PACKAGE__->export_to_level(1, $package, @_) if @_; |
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} |
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34
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my %pck = ( |
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byte => "C", |
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short => "s", |
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ushort => "S", |
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38
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long => "l", |
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39
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longlong => "q", |
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float => "f", |
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double => "d", |
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42
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); |
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43
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44
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sub _serialdate2longlong { |
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my $v = shift; # MS Excel serial datetime |
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my $epoch_miliseconds_float = ($v - 25569) * 24 * 60 * 60 * 1000; |
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return 1000 * int POSIX::floor($epoch_miliseconds_float + 0.5); # longlong epoch microseconds |
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48
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} |
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50
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sub _longlong2serialdate { |
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51
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my $v = shift; |
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52
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# return MS Excel serial datetime (with microsecond-only precision) |
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return 25569 + ( int($v / 1000) / (24 * 60 * 60 * 1000) ); |
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} |
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55
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56
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sub wxlsx1D { |
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57
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my ($fh, $O, $C) = _proc_wargs('1D', @_); |
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58
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59
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my $cols = 0; |
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60
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my $rows = 0; |
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61
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my @c_pdl; |
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62
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my @c_rows; |
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63
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my @c_type; |
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64
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my @c_size; |
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65
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my @c_pack; |
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66
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my @c_dataref; |
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67
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my @c_offset; |
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68
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my @c_max_offset; |
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69
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my @c_bad; |
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70
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71
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my %alias = ( |
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72
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'%Y-%m-%d' => [ 11, 'yyyy\-mm\-dd' ], |
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73
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'%Y-%m-%dT%H:%M' => [ 16, 'yyyy\-mm\-dd\ hh:mm' ], |
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'%Y-%m-%dT%H:%M:%S' => [ 18, 'yyyy\-mm\-dd\ hh:mm:ss' ], |
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75
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'%Y-%m-%dT%H:%M:%S.%3N' => [ 22, 'yyyy\-mm\-dd\ hh:mm:ss.000' ], |
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76
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'%Y-%m-%dT%H:%M:%S.%6N' => [ 22, 'yyyy\-mm\-dd\ hh:mm:ss.000' ], |
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77
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); |
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78
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79
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my $bad2empty = $O->{bad2empty}; |
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80
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81
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my @xlsx_format_array; |
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82
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my %xlsx_width_hash; |
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83
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84
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while (blessed $_[0] && $_[0]->isa('PDL')) { |
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85
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$c_pdl[$cols] = shift; |
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86
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croak "FATAL: wxlsx1D() expects 1D piddles" unless $c_pdl[$cols]->ndims == 1; |
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87
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$c_size[$cols] = PDL::Core::howbig($c_pdl[$cols]->get_datatype); |
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88
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$c_dataref[$cols] = $c_pdl[$cols]->get_dataref; |
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89
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$c_offset[$cols] = 0; |
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90
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my $type = $c_pdl[$cols]->type; |
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91
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my $dim = $c_pdl[$cols]->dim(0); |
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92
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$c_pack[$cols] = $pck{$type}; |
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93
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$c_max_offset[$cols] = $c_size[$cols] * $dim; |
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94
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$rows = $dim if $rows < $dim; |
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95
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if ($bad2empty && $c_pdl[$cols]->check_badflag) { |
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96
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my $b = pdl($type, 1)->setbadif(1); |
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97
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my $d = $b->get_dataref; |
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98
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$c_bad[$cols] = substr($$d, 0, $c_size[$cols]); # raw bytes representind BAD value |
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99
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} |
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100
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if (ref $c_pdl[$cols] eq 'PDL::DateTime') { |
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101
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my $strf = $c_pdl[$cols]->_autodetect_strftime_format; #XXX-TODO _autodetect_strftime_format is a hack!! |
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102
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my ($len, $fmt) = @{$alias{$strf}}; |
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103
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if (defined $len && defined $fmt) { |
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104
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$xlsx_format_array[$cols] = $fmt; # 0-based index |
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105
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$xlsx_width_hash{$cols + 1} = $len ; # 1-based index |
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106
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} |
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107
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} |
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108
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$cols++; |
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109
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} |
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110
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111
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my $xlsx = PDL::IO::XLSX::Writer->new(%$C); |
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112
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$xlsx->sheets->start($O->{sheet_name} // "Sheet1", \%xlsx_width_hash, \@xlsx_format_array); |
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113
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114
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if (ref $O->{header} eq 'ARRAY') { |
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115
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croak "FATAL: wrong header (expected $cols items)" if $cols != scalar @{$O->{header}}; |
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116
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$xlsx->sheets->add_row($O->{header}); #XXX-TODO apply a special style for header cells (gray background) |
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117
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} |
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118
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119
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for my $r (0..$rows-1) { |
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120
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my @v = ('') x $cols; |
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121
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for my $c (0..$cols-1) { |
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122
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if ($c_max_offset[$c] >= $c_offset[$c]) { |
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123
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if ($bad2empty && $c_bad[$c]) { |
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124
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my $v = substr(${$c_dataref[$c]}, $c_offset[$c], $c_size[$c]); |
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125
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if ($v ne $c_bad[$c]) { |
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126
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$v[$c] = unpack($c_pack[$c], $v); |
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127
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$v[$c] = _longlong2serialdate($v[$c]) if ref $c_pdl[$c] eq 'PDL::DateTime'; |
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128
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} |
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129
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} |
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130
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else { |
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131
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my $v = substr(${$c_dataref[$c]}, $c_offset[$c], $c_size[$c]); |
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132
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$v[$c] = unpack($c_pack[$c], $v); |
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133
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$v[$c] = _longlong2serialdate($v[$c]) if ref $c_pdl[$c] eq 'PDL::DateTime'; |
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134
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} |
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135
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} |
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136
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$c_offset[$c] += $c_size[$c]; |
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137
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} |
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138
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$xlsx->sheets->add_row(\@v); |
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139
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} |
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140
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$xlsx->sheets->save; |
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141
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$xlsx->xlsx_save($fh, $C->{overwrite}); |
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142
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} |
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143
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144
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sub wxlsx2D { |
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145
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my $pdl = shift; |
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146
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my ($fh, $O, $C) = _proc_wargs('2D', @_); |
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147
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148
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croak "FATAL: wxlsx2D() expects 2D piddle" unless $pdl->ndims == 2; |
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149
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my $p = $pdl->transpose; |
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150
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151
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my ($cols, $rows) = $p->dims; |
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152
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my $type = $p->type; |
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153
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my $size = PDL::Core::howbig($p->get_datatype); |
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154
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my $packC = $pck{$type} . "[$cols]"; |
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155
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my $pack1 = $pck{$type}; |
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156
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my $dataref = $p->get_dataref; |
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157
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my $offset = 0; |
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158
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my $colsize = $size * $cols; |
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159
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my $max_offset = $colsize * ($rows - 1); |
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160
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my $bad; |
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161
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if ($O->{bad2empty} && $p->check_badflag) { |
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162
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my $b = pdl($type, 1)->setbadif(1); |
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163
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my $d = $b->get_dataref; |
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164
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$bad = substr($$d, 0, $size); # raw bytes representing BAD value |
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165
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} |
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166
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167
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my $xlsx = PDL::IO::XLSX::Writer->new(%$C); |
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168
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$xlsx->sheets->start($O->{sheet_name} // "Sheet1"); |
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169
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170
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if ($O->{header}) { |
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171
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my $n = scalar @{$O->{header}}; |
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172
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croak "FATAL: wrong header (expected $cols items, got $n)" if $cols != $n; |
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173
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$xlsx->sheets->add_row($O->{header}); |
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174
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} |
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175
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while ($offset <= $max_offset) { |
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176
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if (defined $bad) { |
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177
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my @v = map { my $v = substr($$dataref, $offset + $_*$size, $size); $v eq $bad ? '' : unpack($pack1, $v) } (0..$cols-1); |
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178
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$xlsx->sheets->add_row(\@v); |
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179
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} |
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180
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else { |
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181
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my @v = unpack($packC, substr($$dataref, $offset, $colsize)); |
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182
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$xlsx->sheets->add_row(\@v); |
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183
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} |
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184
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$offset += $colsize; |
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185
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} |
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186
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$xlsx->sheets->save; |
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187
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188
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$xlsx->xlsx_save($fh, $C->{overwrite}); |
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189
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} |
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190
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191
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sub rxlsx1D { |
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192
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my ($fh, $coli, $O, $C) = _proc_rargs('1D', @_); |
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193
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194
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my ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $c_idx, $c_dt, $allocated, $cols); # initialize after we get 1st line |
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195
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196
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my $xlsx = PDL::IO::XLSX::Reader->new($fh, %$C); |
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197
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my $processed = 0; |
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198
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my $finished = 0; |
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199
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my $reshape_inc = $O->{reshape_inc}; |
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200
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my $empty2bad = $O->{empty2bad}; |
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201
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my $text2bad = $O->{text2bad}; |
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202
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203
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my $headerline; |
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204
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my $auto_detect_headerline; |
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205
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my $skip_before_headerline; |
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206
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my $rows = 0; |
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207
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my @bytes; |
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208
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209
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if (looks_like_number($O->{header}) && $O->{header} >= 1) { |
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210
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$skip_before_headerline = $O->{header} - 1; |
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211
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} |
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212
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elsif (($O->{header}//'') eq 'auto') { |
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213
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$auto_detect_headerline = 1; |
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214
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} |
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215
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216
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my $proc_line = sub { |
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217
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my $r = shift; |
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218
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my $f = shift; |
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219
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if (defined $r) { |
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220
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if (defined $skip_before_headerline) { |
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221
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if ($skip_before_headerline == 0) { |
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222
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$headerline = $r; |
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223
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$skip_before_headerline = undef; |
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224
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} |
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225
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else { |
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226
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$skip_before_headerline--; |
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227
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} |
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228
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return; # go to the next line |
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229
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} |
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230
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elsif (defined $auto_detect_headerline) { |
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231
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my $numeric = 0; |
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232
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for (@$r) { $numeric++ if looks_like_number($_) || defined PDL::DateTime::dt2ll($_) } |
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233
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if ($numeric == 0) { |
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234
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# no numeric values found => skip this line but keep it as a potential header |
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235
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$headerline = $r; |
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236
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return; # go to the next line |
|
237
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} |
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238
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$auto_detect_headerline = undef; |
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239
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} |
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240
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unless (defined $c_type) { |
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241
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($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $c_idx, $c_dt, $allocated, $cols) = _init_1D($coli, $r, $f, $O); |
|
242
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|
warn "Initialized size=$allocated, cols=$cols, type=".join(",",@$c_type)."\n" if $O->{debug}; |
|
243
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} |
|
244
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if ($empty2bad) { |
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245
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if (defined $coli) { |
|
246
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for (0..$cols-1) { |
|
247
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|
my $i = $coli->[$_]; |
|
248
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|
unless (defined $r->[$i]) { $r->[$i] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) } |
|
249
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} |
|
250
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} |
|
251
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|
else { |
|
252
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|
for (0..$cols-1) { |
|
253
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|
unless (defined $r->[$_]) { $r->[$_] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) } |
|
254
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|
} |
|
255
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|
} |
|
256
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|
} |
|
257
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|
if (defined $c_dt) { |
|
258
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|
for (0..$cols-1) { |
|
259
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|
|
next unless defined $c_dt->[$_]; |
|
260
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|
|
my $v = _serialdate2longlong($r->[$_]); |
|
261
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|
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|
|
if (defined $v) { |
|
262
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|
|
$r->[$_] = $v; |
|
263
|
|
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|
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|
|
} |
|
264
|
|
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|
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|
|
else { |
|
265
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|
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|
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|
|
$r->[$_] = $c_bad->[$_]; |
|
266
|
|
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|
|
|
|
$c_pdl->[$_]->badflag(1); |
|
267
|
|
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|
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|
|
} |
|
268
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|
|
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|
|
} |
|
269
|
|
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|
|
} |
|
270
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|
|
|
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|
|
if ($text2bad) { |
|
271
|
|
|
|
|
|
|
if (defined $coli) { |
|
272
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
273
|
|
|
|
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|
|
my $i = $coli->[$_]; |
|
274
|
|
|
|
|
|
|
unless (looks_like_number($r->[$i])) { $r->[$i] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) } |
|
275
|
|
|
|
|
|
|
} |
|
276
|
|
|
|
|
|
|
} |
|
277
|
|
|
|
|
|
|
else { |
|
278
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
279
|
|
|
|
|
|
|
unless (looks_like_number($r->[$_])) { $r->[$_] = $c_bad->[$_]; $c_pdl->[$_]->badflag(1) } |
|
280
|
|
|
|
|
|
|
} |
|
281
|
|
|
|
|
|
|
} |
|
282
|
|
|
|
|
|
|
} |
|
283
|
|
|
|
|
|
|
if (defined $coli) { # only selected columns |
|
284
|
|
|
|
|
|
|
no warnings 'pack'; # intentionally disable all pack related warnings |
|
285
|
|
|
|
|
|
|
no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack |
|
286
|
|
|
|
|
|
|
no warnings 'uninitialized'; # disable: Use of uninitialized value in pack |
|
287
|
|
|
|
|
|
|
$bytes[$_] .= pack($c_pack->[$_], $r->[$coli->[$_]]) for (0..$cols-1); |
|
288
|
|
|
|
|
|
|
} |
|
289
|
|
|
|
|
|
|
else { # all columns |
|
290
|
|
|
|
|
|
|
no warnings 'pack'; # intentionally disable all pack related warnings |
|
291
|
|
|
|
|
|
|
no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack |
|
292
|
|
|
|
|
|
|
no warnings 'uninitialized'; # disable: Use of uninitialized value in pack |
|
293
|
|
|
|
|
|
|
$bytes[$_] .= pack($c_pack->[$_], $r->[$_]) for (0..$cols-1); |
|
294
|
|
|
|
|
|
|
} |
|
295
|
|
|
|
|
|
|
$rows++; |
|
296
|
|
|
|
|
|
|
} |
|
297
|
|
|
|
|
|
|
if ($rows >= $reshape_inc || !defined $r) { |
|
298
|
|
|
|
|
|
|
$processed += $rows; |
|
299
|
|
|
|
|
|
|
if (!defined $r) { |
|
300
|
|
|
|
|
|
|
# flush/finalize |
|
301
|
|
|
|
|
|
|
$allocated = $processed; |
|
302
|
|
|
|
|
|
|
warn "Reshape to: '$allocated'\n" if $O->{debug}; |
|
303
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
304
|
|
|
|
|
|
|
$c_pdl->[$_]->reshape($allocated); |
|
305
|
|
|
|
|
|
|
$c_dataref->[$_] = $c_pdl->[$_]->get_dataref; |
|
306
|
|
|
|
|
|
|
} |
|
307
|
|
|
|
|
|
|
} |
|
308
|
|
|
|
|
|
|
elsif ($allocated < $processed) { |
|
309
|
|
|
|
|
|
|
$allocated += $reshape_inc; |
|
310
|
|
|
|
|
|
|
warn "Reshape to: '$allocated'\n" if $O->{debug}; |
|
311
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
312
|
|
|
|
|
|
|
$c_pdl->[$_]->reshape($allocated); |
|
313
|
|
|
|
|
|
|
$c_dataref->[$_] = $c_pdl->[$_]->get_dataref; |
|
314
|
|
|
|
|
|
|
} |
|
315
|
|
|
|
|
|
|
} |
|
316
|
|
|
|
|
|
|
for my $ci (0..$cols-1) { |
|
317
|
|
|
|
|
|
|
my $len = length $bytes[$ci]; |
|
318
|
|
|
|
|
|
|
my $expected_len = $c_sizeof->[$ci] * $rows; |
|
319
|
|
|
|
|
|
|
croak "FATAL: len mismatch $len != $expected_len" if $len != $expected_len; |
|
320
|
|
|
|
|
|
|
substr(${$c_dataref->[$ci]}, $c_idx->[$ci], $len) = $bytes[$ci]; |
|
321
|
|
|
|
|
|
|
$c_idx->[$ci] += $expected_len; |
|
322
|
|
|
|
|
|
|
} |
|
323
|
|
|
|
|
|
|
@bytes = (); |
|
324
|
|
|
|
|
|
|
$rows = 0; |
|
325
|
|
|
|
|
|
|
if (!defined $r) { |
|
326
|
|
|
|
|
|
|
# flush/finalize |
|
327
|
|
|
|
|
|
|
$c_pdl->[$_]->upd_data for (0..$cols-1); |
|
328
|
|
|
|
|
|
|
} |
|
329
|
|
|
|
|
|
|
} |
|
330
|
|
|
|
|
|
|
}; |
|
331
|
|
|
|
|
|
|
|
|
332
|
|
|
|
|
|
|
warn "Fetching 1D " . _dbg_msg($O, $C) . "\n" if $O->{debug}; |
|
333
|
|
|
|
|
|
|
if ($O->{sheet_name}) { |
|
334
|
|
|
|
|
|
|
$xlsx->parse_sheet_by_name($O->{sheet_name}, sub { |
|
335
|
|
|
|
|
|
|
my $r = [ map { $_->{v} } @{$_[0]} ]; #values |
|
336
|
|
|
|
|
|
|
my $f = [ map { $_->{f} } @{$_[0]} ]; #formats |
|
337
|
|
|
|
|
|
|
$proc_line->($r, $f); |
|
338
|
|
|
|
|
|
|
}); |
|
339
|
|
|
|
|
|
|
} |
|
340
|
|
|
|
|
|
|
else { |
|
341
|
|
|
|
|
|
|
$xlsx->parse_sheet_by_id(1, sub { |
|
342
|
|
|
|
|
|
|
my $r = [ map { $_->{v} } @{$_[0]} ]; #values |
|
343
|
|
|
|
|
|
|
my $f = [ map { $_->{f} } @{$_[0]} ]; #formats |
|
344
|
|
|
|
|
|
|
$proc_line->($r, $f); |
|
345
|
|
|
|
|
|
|
}); |
|
346
|
|
|
|
|
|
|
} |
|
347
|
|
|
|
|
|
|
|
|
348
|
|
|
|
|
|
|
$proc_line->(undef); # flush/finalize |
|
349
|
|
|
|
|
|
|
if (ref $headerline eq 'ARRAY') { |
|
350
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
351
|
|
|
|
|
|
|
$c_pdl->[$_]->hdr->{col_name} = $headerline->[$_] if $headerline->[$_] && $headerline->[$_] ne ''; |
|
352
|
|
|
|
|
|
|
}; |
|
353
|
|
|
|
|
|
|
} |
|
354
|
|
|
|
|
|
|
|
|
355
|
|
|
|
|
|
|
return @$c_pdl if ref $c_pdl eq 'ARRAY'; |
|
356
|
|
|
|
|
|
|
warn "rxlsx1D: no data\n"; |
|
357
|
|
|
|
|
|
|
return undef; |
|
358
|
|
|
|
|
|
|
} |
|
359
|
|
|
|
|
|
|
|
|
360
|
|
|
|
|
|
|
sub rxlsx2D { |
|
361
|
|
|
|
|
|
|
my ($fh, $coli, $O, $C) = _proc_rargs('2D', @_); |
|
362
|
|
|
|
|
|
|
|
|
363
|
|
|
|
|
|
|
my ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols); |
|
364
|
|
|
|
|
|
|
my $xlsx = PDL::IO::XLSX::Reader->new($fh, %$C); |
|
365
|
|
|
|
|
|
|
my $processed = 0; |
|
366
|
|
|
|
|
|
|
my $c_idx = 0; |
|
367
|
|
|
|
|
|
|
my $pck; |
|
368
|
|
|
|
|
|
|
my $reshape_inc = $O->{reshape_inc}; |
|
369
|
|
|
|
|
|
|
my $empty2bad = $O->{empty2bad}; |
|
370
|
|
|
|
|
|
|
my $text2bad = $O->{text2bad}; |
|
371
|
|
|
|
|
|
|
my $bcount = 0; |
|
372
|
|
|
|
|
|
|
my $bytes = ''; |
|
373
|
|
|
|
|
|
|
my $rows = 0; |
|
374
|
|
|
|
|
|
|
my $headers_to_skip = looks_like_number($O->{header}) ? $O->{header} : 0; |
|
375
|
|
|
|
|
|
|
my $formats; |
|
376
|
|
|
|
|
|
|
|
|
377
|
|
|
|
|
|
|
my $proc_line = sub { |
|
378
|
|
|
|
|
|
|
my $r = shift; |
|
379
|
|
|
|
|
|
|
if (defined $r) { |
|
380
|
|
|
|
|
|
|
if ($headers_to_skip > 0) { |
|
381
|
|
|
|
|
|
|
$headers_to_skip--; |
|
382
|
|
|
|
|
|
|
return; |
|
383
|
|
|
|
|
|
|
} |
|
384
|
|
|
|
|
|
|
unless (defined $pck) { |
|
385
|
|
|
|
|
|
|
($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols) = _init_2D($coli, scalar @$r, $O); |
|
386
|
|
|
|
|
|
|
warn "Initialized size=$allocated, cols=$cols, type=$c_type\n" if $O->{debug}; |
|
387
|
|
|
|
|
|
|
$pck = "$c_pack\[$cols\]"; |
|
388
|
|
|
|
|
|
|
} |
|
389
|
|
|
|
|
|
|
if ($empty2bad) { |
|
390
|
|
|
|
|
|
|
if (defined $coli) { |
|
391
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
392
|
|
|
|
|
|
|
my $i = $coli->[$_]; |
|
393
|
|
|
|
|
|
|
if (($r->[$i]//'') eq '') { |
|
394
|
|
|
|
|
|
|
$r->[$i] = $c_bad; |
|
395
|
|
|
|
|
|
|
$c_pdl->badflag(1); |
|
396
|
|
|
|
|
|
|
} |
|
397
|
|
|
|
|
|
|
} |
|
398
|
|
|
|
|
|
|
} |
|
399
|
|
|
|
|
|
|
else { |
|
400
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
401
|
|
|
|
|
|
|
if (($r->[$_]//'') eq '') { |
|
402
|
|
|
|
|
|
|
$r->[$_] = $c_bad; |
|
403
|
|
|
|
|
|
|
$c_pdl->badflag(1); |
|
404
|
|
|
|
|
|
|
} |
|
405
|
|
|
|
|
|
|
} |
|
406
|
|
|
|
|
|
|
} |
|
407
|
|
|
|
|
|
|
} |
|
408
|
|
|
|
|
|
|
if ($text2bad) { |
|
409
|
|
|
|
|
|
|
if (defined $coli) { |
|
410
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
411
|
|
|
|
|
|
|
my $i = $coli->[$_]; |
|
412
|
|
|
|
|
|
|
unless (looks_like_number($r->[$i])) { $r->[$i] = $c_bad; $c_pdl->badflag(1) } |
|
413
|
|
|
|
|
|
|
} |
|
414
|
|
|
|
|
|
|
} |
|
415
|
|
|
|
|
|
|
else { |
|
416
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
417
|
|
|
|
|
|
|
unless (looks_like_number($r->[$_])) { $r->[$_] = $c_bad; $c_pdl->badflag(1) } |
|
418
|
|
|
|
|
|
|
} |
|
419
|
|
|
|
|
|
|
} |
|
420
|
|
|
|
|
|
|
} |
|
421
|
|
|
|
|
|
|
if (defined $coli) { # only selected columns |
|
422
|
|
|
|
|
|
|
no warnings 'pack'; # intentionally disable all pack related warnings |
|
423
|
|
|
|
|
|
|
no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack |
|
424
|
|
|
|
|
|
|
no warnings 'uninitialized'; # disable: Use of uninitialized value in pack |
|
425
|
|
|
|
|
|
|
$bytes .= pack($pck, map { $r->[$_] } @$coli); |
|
426
|
|
|
|
|
|
|
} |
|
427
|
|
|
|
|
|
|
else { # all columns |
|
428
|
|
|
|
|
|
|
no warnings 'pack'; # intentionally disable all pack related warnings |
|
429
|
|
|
|
|
|
|
no warnings 'numeric'; # disable: Argument ??? isn't numeric in pack |
|
430
|
|
|
|
|
|
|
no warnings 'uninitialized'; # disable: Use of uninitialized value in pack |
|
431
|
|
|
|
|
|
|
$bytes .= pack($pck, @$r); |
|
432
|
|
|
|
|
|
|
} |
|
433
|
|
|
|
|
|
|
$rows++; |
|
434
|
|
|
|
|
|
|
} |
|
435
|
|
|
|
|
|
|
if ($rows >= $reshape_inc || !defined $r) { |
|
436
|
|
|
|
|
|
|
$processed += $rows; |
|
437
|
|
|
|
|
|
|
if (!defined $r) { |
|
438
|
|
|
|
|
|
|
# flush/finalize |
|
439
|
|
|
|
|
|
|
$allocated = $processed; |
|
440
|
|
|
|
|
|
|
warn "Reshaping to $allocated\n" if $O->{debug}; |
|
441
|
|
|
|
|
|
|
$c_pdl->reshape($cols, $allocated); |
|
442
|
|
|
|
|
|
|
$c_dataref = $c_pdl->get_dataref; |
|
443
|
|
|
|
|
|
|
} |
|
444
|
|
|
|
|
|
|
elsif ($allocated < $processed) { |
|
445
|
|
|
|
|
|
|
$allocated += $reshape_inc; |
|
446
|
|
|
|
|
|
|
warn "Reshaping to $allocated\n" if $O->{debug}; |
|
447
|
|
|
|
|
|
|
$c_pdl->reshape($cols, $allocated); |
|
448
|
|
|
|
|
|
|
$c_dataref = $c_pdl->get_dataref; |
|
449
|
|
|
|
|
|
|
} |
|
450
|
|
|
|
|
|
|
my $len = length $bytes; |
|
451
|
|
|
|
|
|
|
my $expected_len = $c_sizeof * $cols * $rows; |
|
452
|
|
|
|
|
|
|
croak "FATAL: len mismatch $len != $expected_len" if $len != $expected_len; |
|
453
|
|
|
|
|
|
|
substr($$c_dataref, $c_idx, $len) = $bytes; |
|
454
|
|
|
|
|
|
|
$c_idx += $len; |
|
455
|
|
|
|
|
|
|
$bytes = ''; |
|
456
|
|
|
|
|
|
|
$rows = 0; |
|
457
|
|
|
|
|
|
|
if (!defined $r) { |
|
458
|
|
|
|
|
|
|
# flush/finalize |
|
459
|
|
|
|
|
|
|
$c_pdl->upd_data; |
|
460
|
|
|
|
|
|
|
$c_pdl = $c_pdl->transpose; |
|
461
|
|
|
|
|
|
|
} |
|
462
|
|
|
|
|
|
|
} |
|
463
|
|
|
|
|
|
|
}; |
|
464
|
|
|
|
|
|
|
|
|
465
|
|
|
|
|
|
|
warn "Fetching 2D " . _dbg_msg($O, $C) . "\n" if $O->{debug}; |
|
466
|
|
|
|
|
|
|
if ($O->{sheet_name}) { |
|
467
|
|
|
|
|
|
|
$xlsx->parse_sheet_by_name($O->{sheet_name}, sub { |
|
468
|
|
|
|
|
|
|
my $r = [ map { $_->{v} } @{$_[0]} ]; #values |
|
469
|
|
|
|
|
|
|
my $f = [ map { $_->{f} } @{$_[0]} ]; #formats |
|
470
|
|
|
|
|
|
|
$proc_line->($r, $f); |
|
471
|
|
|
|
|
|
|
}); |
|
472
|
|
|
|
|
|
|
} |
|
473
|
|
|
|
|
|
|
else { |
|
474
|
|
|
|
|
|
|
$xlsx->parse_sheet_by_id(1, sub { |
|
475
|
|
|
|
|
|
|
my $r = [ map { $_->{v} } @{$_[0]} ]; #values |
|
476
|
|
|
|
|
|
|
my $f = [ map { $_->{f} } @{$_[0]} ]; #formats |
|
477
|
|
|
|
|
|
|
$proc_line->($r, $f); |
|
478
|
|
|
|
|
|
|
}); |
|
479
|
|
|
|
|
|
|
} |
|
480
|
|
|
|
|
|
|
|
|
481
|
|
|
|
|
|
|
$proc_line->(undef); # flush/finalize |
|
482
|
|
|
|
|
|
|
|
|
483
|
|
|
|
|
|
|
warn "rxlsx2D: no data\n" unless blessed $c_pdl && $c_pdl->isa('PDL'); |
|
484
|
|
|
|
|
|
|
return $c_pdl; |
|
485
|
|
|
|
|
|
|
} |
|
486
|
|
|
|
|
|
|
|
|
487
|
|
|
|
|
|
|
sub _dbg_msg { |
|
488
|
|
|
|
|
|
|
my ($O, $C) = @_; |
|
489
|
|
|
|
|
|
|
sprintf "reshape=%s, bad=%s/%s", |
|
490
|
|
|
|
|
|
|
$O->{reshape_inc} ||= '?', |
|
491
|
|
|
|
|
|
|
$O->{empty2bad} ||= '?', |
|
492
|
|
|
|
|
|
|
$O->{text2bad} ||= '?', |
|
493
|
|
|
|
|
|
|
} |
|
494
|
|
|
|
|
|
|
|
|
495
|
|
|
|
|
|
|
sub _proc_wargs { |
|
496
|
|
|
|
|
|
|
my $options = ref $_[-1] eq 'HASH' ? pop : {}; |
|
497
|
|
|
|
|
|
|
my $filename_or_fh = !blessed $_[-1] || !$_[-1]->isa('PDL') ? pop : undef; |
|
498
|
|
|
|
|
|
|
my $fn = shift; |
|
499
|
|
|
|
|
|
|
|
|
500
|
|
|
|
|
|
|
my $C = { %$options }; # make a copy |
|
501
|
|
|
|
|
|
|
|
|
502
|
|
|
|
|
|
|
my @keys = qw/ debug header bad2empty sheet_name /; |
|
503
|
|
|
|
|
|
|
my $O = { map { $_ => delete $C->{$_} } @keys }; |
|
504
|
|
|
|
|
|
|
$O->{debug} //= DEBUG; |
|
505
|
|
|
|
|
|
|
$O->{bad2empty} //= 1; |
|
506
|
|
|
|
|
|
|
$O->{header} //= ($fn eq '1D' ? 'auto' : undef); |
|
507
|
|
|
|
|
|
|
|
|
508
|
|
|
|
|
|
|
if (defined $O->{header}) { |
|
509
|
|
|
|
|
|
|
croak "FATAL: header should be arrayref" unless ref $O->{header} eq 'ARRAY' || $O->{header} eq 'auto'; |
|
510
|
|
|
|
|
|
|
if ($O->{header} eq 'auto') { |
|
511
|
|
|
|
|
|
|
my @n; |
|
512
|
|
|
|
|
|
|
my $count = 0; |
|
513
|
|
|
|
|
|
|
for (@_) { |
|
514
|
|
|
|
|
|
|
push @n, my $n = $_->hdr->{col_name}; |
|
515
|
|
|
|
|
|
|
$count++ if defined $n; |
|
516
|
|
|
|
|
|
|
} |
|
517
|
|
|
|
|
|
|
$O->{header} = $count > 0 ? \@n : undef; |
|
518
|
|
|
|
|
|
|
} |
|
519
|
|
|
|
|
|
|
} |
|
520
|
|
|
|
|
|
|
|
|
521
|
|
|
|
|
|
|
return ($filename_or_fh, $O, $C); |
|
522
|
|
|
|
|
|
|
} |
|
523
|
|
|
|
|
|
|
|
|
524
|
|
|
|
|
|
|
sub _proc_rargs { |
|
525
|
|
|
|
|
|
|
my $options = ref $_[-1] eq 'HASH' ? pop : {}; |
|
526
|
|
|
|
|
|
|
my ($fn, $filename_or_fh, $coli) = @_; |
|
527
|
|
|
|
|
|
|
|
|
528
|
|
|
|
|
|
|
croak "FATAL: invalid column ids" if defined $coli && ref $coli ne 'ARRAY'; |
|
529
|
|
|
|
|
|
|
croak "FATAL: invalid filename" unless defined $filename_or_fh; |
|
530
|
|
|
|
|
|
|
my $C = { %$options }; # make a copy |
|
531
|
|
|
|
|
|
|
|
|
532
|
|
|
|
|
|
|
# get options related to this module the rest will be passed to PDL::IO::XLSX::Reader|Writer |
|
533
|
|
|
|
|
|
|
my @keys = qw/ reshape_inc type debug empty2bad text2bad header sheet_name /; |
|
534
|
|
|
|
|
|
|
my $O = { map { $_ => delete $C->{$_} } @keys }; |
|
535
|
|
|
|
|
|
|
$O->{reshape_inc} ||= 80_000; |
|
536
|
|
|
|
|
|
|
$O->{type} ||= ($fn eq '1D' ? 'auto' : double); |
|
537
|
|
|
|
|
|
|
$O->{header} ||= ($fn eq '1D' ? 'auto' : 0); |
|
538
|
|
|
|
|
|
|
$O->{debug} = DEBUG unless defined $O->{debug}; |
|
539
|
|
|
|
|
|
|
|
|
540
|
|
|
|
|
|
|
# empty2bad implies some PDL::IO::XLSX::Reader extra options |
|
541
|
|
|
|
|
|
|
if ($O->{empty2bad}) { |
|
542
|
|
|
|
|
|
|
$C->{blank_is_undef} = 1; |
|
543
|
|
|
|
|
|
|
$C->{empty_is_undef} = 1; |
|
544
|
|
|
|
|
|
|
} |
|
545
|
|
|
|
|
|
|
|
|
546
|
|
|
|
|
|
|
return ($filename_or_fh, $coli, $O, $C); |
|
547
|
|
|
|
|
|
|
} |
|
548
|
|
|
|
|
|
|
|
|
549
|
|
|
|
|
|
|
sub _init_1D { |
|
550
|
|
|
|
|
|
|
my ($coli, $firstline_v, $firstline_f, $O) = @_; |
|
551
|
|
|
|
|
|
|
my $colcount = scalar @$firstline_v; |
|
552
|
|
|
|
|
|
|
my $cols; |
|
553
|
|
|
|
|
|
|
if (!defined $coli) { # take all columns |
|
554
|
|
|
|
|
|
|
$cols = $colcount; |
|
555
|
|
|
|
|
|
|
} |
|
556
|
|
|
|
|
|
|
else { |
|
557
|
|
|
|
|
|
|
$cols = scalar @$coli; |
|
558
|
|
|
|
|
|
|
($_<0 || $_>$colcount) and croak "FATAL: invalid column '$_' (column count=$colcount)" for (@$coli); |
|
559
|
|
|
|
|
|
|
} |
|
560
|
|
|
|
|
|
|
croak "FATAL: invalid column count" unless $cols && $cols > 0 && $cols <= $colcount; |
|
561
|
|
|
|
|
|
|
|
|
562
|
|
|
|
|
|
|
my @c_type; |
|
563
|
|
|
|
|
|
|
my @c_pack; |
|
564
|
|
|
|
|
|
|
my @c_sizeof; |
|
565
|
|
|
|
|
|
|
my @c_pdl; |
|
566
|
|
|
|
|
|
|
my @c_bad; |
|
567
|
|
|
|
|
|
|
my @c_dataref; |
|
568
|
|
|
|
|
|
|
my @c_idx; |
|
569
|
|
|
|
|
|
|
|
|
570
|
|
|
|
|
|
|
if (ref $O->{type} eq 'ARRAY') { |
|
571
|
|
|
|
|
|
|
$c_type[$_] = $O->{type}->[$_] for (0..$cols-1); |
|
572
|
|
|
|
|
|
|
} |
|
573
|
|
|
|
|
|
|
else { |
|
574
|
|
|
|
|
|
|
$c_type[$_] = $O->{type} for (0..$cols-1); |
|
575
|
|
|
|
|
|
|
} |
|
576
|
|
|
|
|
|
|
|
|
577
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
578
|
|
|
|
|
|
|
if (!defined $c_type[$_] || $c_type[$_] eq 'auto') { |
|
579
|
|
|
|
|
|
|
if ($firstline_f->[$_] =~ /^datetime\.(date|time|datetime)$/) { |
|
580
|
|
|
|
|
|
|
$c_type[$_] = 'datetime'; |
|
581
|
|
|
|
|
|
|
} |
|
582
|
|
|
|
|
|
|
elsif ($firstline_f->[$_] eq 'int') { |
|
583
|
|
|
|
|
|
|
$c_type[$_] = longlong; |
|
584
|
|
|
|
|
|
|
} |
|
585
|
|
|
|
|
|
|
else { |
|
586
|
|
|
|
|
|
|
$c_type[$_] = double; |
|
587
|
|
|
|
|
|
|
} |
|
588
|
|
|
|
|
|
|
} |
|
589
|
|
|
|
|
|
|
} |
|
590
|
|
|
|
|
|
|
|
|
591
|
|
|
|
|
|
|
my @c_dt; |
|
592
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
593
|
|
|
|
|
|
|
if ($c_type[$_] eq 'datetime') { |
|
594
|
|
|
|
|
|
|
$c_type[$_] = longlong; |
|
595
|
|
|
|
|
|
|
$c_dt[$_] = 'datetime'; |
|
596
|
|
|
|
|
|
|
} |
|
597
|
|
|
|
|
|
|
} |
|
598
|
|
|
|
|
|
|
|
|
599
|
|
|
|
|
|
|
my $allocated = $O->{reshape_inc}; |
|
600
|
|
|
|
|
|
|
for (0..$cols-1) { |
|
601
|
|
|
|
|
|
|
$c_type[$_] = double if !defined $c_type[$_]; |
|
602
|
|
|
|
|
|
|
$c_pack[$_] = $pck{$c_type[$_]}; |
|
603
|
|
|
|
|
|
|
croak "FATAL: invalid type '$c_type[$_]' for column $_" if !$c_pack[$_]; |
|
604
|
|
|
|
|
|
|
$c_sizeof[$_] = length pack($c_pack[$_], 1); |
|
605
|
|
|
|
|
|
|
$c_pdl[$_] = $c_dt[$_] ? PDL::DateTime->new(zeroes(longlong, $allocated)) : zeroes($c_type[$_], $allocated); |
|
606
|
|
|
|
|
|
|
$c_dataref[$_] = $c_pdl[$_]->get_dataref; |
|
607
|
|
|
|
|
|
|
$c_bad[$_] = $c_pdl[$_]->badvalue; |
|
608
|
|
|
|
|
|
|
$c_idx[$_] = 0; |
|
609
|
|
|
|
|
|
|
my $big = PDL::Core::howbig($c_pdl[$_]->get_datatype); |
|
610
|
|
|
|
|
|
|
croak "FATAL: column $_ mismatch (type=$c_type[$_], sizeof=$c_sizeof[$_], big=$big)" if $big != $c_sizeof[$_]; |
|
611
|
|
|
|
|
|
|
} |
|
612
|
|
|
|
|
|
|
|
|
613
|
|
|
|
|
|
|
return (\@c_type, \@c_pack, \@c_sizeof, \@c_pdl, \@c_bad, \@c_dataref, \@c_idx, (@c_dt > 0 ? \@c_dt : undef), $allocated, $cols); |
|
614
|
|
|
|
|
|
|
} |
|
615
|
|
|
|
|
|
|
|
|
616
|
|
|
|
|
|
|
sub _init_2D { |
|
617
|
|
|
|
|
|
|
my ($coli, $colcount, $O) = @_; |
|
618
|
|
|
|
|
|
|
|
|
619
|
|
|
|
|
|
|
my $cols; |
|
620
|
|
|
|
|
|
|
if (!defined $coli) { # take all columns |
|
621
|
|
|
|
|
|
|
$cols = $colcount; |
|
622
|
|
|
|
|
|
|
} |
|
623
|
|
|
|
|
|
|
else { |
|
624
|
|
|
|
|
|
|
$cols = scalar @$coli; |
|
625
|
|
|
|
|
|
|
($_<0 || $_>$colcount) and croak "FATAL: invalid column '$_' (column count=$colcount)" for (@$coli); |
|
626
|
|
|
|
|
|
|
} |
|
627
|
|
|
|
|
|
|
croak "FATAL: invalid column count" unless $cols && $cols > 0 && $cols <= $colcount; |
|
628
|
|
|
|
|
|
|
|
|
629
|
|
|
|
|
|
|
my $c_type = $O->{type}; |
|
630
|
|
|
|
|
|
|
my $c_pack = $pck{$c_type}; |
|
631
|
|
|
|
|
|
|
croak "FATAL: invalid type '$c_type' for column $_" if !$c_pack; |
|
632
|
|
|
|
|
|
|
|
|
633
|
|
|
|
|
|
|
my $allocated = $O->{reshape_inc}; |
|
634
|
|
|
|
|
|
|
my $c_sizeof = length pack($c_pack, 1); |
|
635
|
|
|
|
|
|
|
my $c_pdl = zeroes($c_type, $cols, $allocated); |
|
636
|
|
|
|
|
|
|
my $c_dataref = $c_pdl->get_dataref; |
|
637
|
|
|
|
|
|
|
my $c_bad = $c_pdl->badvalue; |
|
638
|
|
|
|
|
|
|
|
|
639
|
|
|
|
|
|
|
my $big = PDL::Core::howbig($c_pdl->get_datatype); |
|
640
|
|
|
|
|
|
|
croak "FATAL: column $_ size mismatch (type=$c_type, sizeof=$c_sizeof, big=$big)" if $big != $c_sizeof; |
|
641
|
|
|
|
|
|
|
|
|
642
|
|
|
|
|
|
|
return ($c_type, $c_pack, $c_sizeof, $c_pdl, $c_bad, $c_dataref, $allocated, $cols); |
|
643
|
|
|
|
|
|
|
} |
|
644
|
|
|
|
|
|
|
|
|
645
|
|
|
|
|
|
|
1; |
|
646
|
|
|
|
|
|
|
|
|
647
|
|
|
|
|
|
|
__END__ |