File Coverage

blib/lib/OBO/Core/Relationship.pm

Criterion	Covered	Total	%
statement	37	38	97.3
branch	13	18	72.2
condition	2	6	33.3
subroutine	10	10	100.0
pod	6	7	85.7
total	68	79	86.0

# $Id: Relationship.pm 2014-11-14 erick.antezana $
#
# Module  : Relationship.pm
# Purpose : Relationship in the Ontology.
# License : Copyright (c) 2006-2015 by Erick Antezana. All rights reserved.
#           This program is free software; you can redistribute it and/or
#           modify it under the same terms as Perl itself.
# Contact : Erick Antezana
#
package OBO::Core::Relationship;

use Carp;
use strict;
use warnings;

sub new {
        my $class      = shift;
        my $self       = {};

        $self->{ID}    = undef; # required, string (1)
        $self->{TYPE}  = undef; # required, string (1)

        $self->{HEAD}  = undef; # required, OBO::Core::Term or OBO::Core::RelationshipType or OBO::Core::Term (1: instance_of)     or OBO::Core::Instance or OBO::Util::Datatype (TODO) or OBO::Util::Datatype (TODO: property_value: shoe_size "8" xsd:positiveInteger)
                                #                  ^^                 ^^                            ^^                                       ^^                    ^^                            ^^
                                #                  ||                 ||                            ||                                       ||                    ||                            ||
        $self->{TAIL}  = undef; # required, OBO::Core::Term or OBO::Core::RelationshipType or OBO::Core::Instance (1: instance_of) or OBO::Core::Term     or OBO::Core::Term (TODO)     or OBO::Core::Instance (TODO)

        bless ($self, $class);
        return $self;
}

=head2 id

  Usage    - print $relationship->id() or $relationship->id($id)
  Returns  - the relationship ID (string)
  Args     - the relationship ID (string)
  Function - gets/sets an ID

=cut

sub id {
	$_[0]->{ID} = $_[1] if ($_[1]);
	return $_[0]->{ID};
}

=head2 type

  Usage    - $relationship->type('is_a') or print $relationship->type()
  Returns  - the type of the relationship (string)
  Args     - the type of the relationship (string)
  Function - gets/sets the type of the relationship
  Remark   - this field corresponds to the relationship type ID (c.f. OBO::Core::RelationshipType::id())

=cut

sub type {
	$_[0]->{TYPE} = $_[1] if ($_[1]);
    return $_[0]->{TYPE};
}

=head2 equals

  Usage    - print $relationship->equals($another_relationship)
  Returns  - either 1 (true) or 0 (false)
  Args     - the relationship (OBO::Core::Relationship) to compare with
  Function - tells whether this relationship is equal to the parameter

=cut

sub equals  {
	my $result = 0;
	if ($_[1]) {
     	if ($_[1] && eval { $_[1]->isa('OBO::Core::Relationship') }) {
			my $self_id   = $_[0]->{'ID'};
			my $target_id = $_[1]->{'ID'};

			croak 'The ID of this relationship is not defined.' if (!defined($self_id));
			croak 'The ID of the target relationship is not defined.' if (!defined($target_id));

			$result = ($self_id eq $target_id);
		} else {
			croak "An unrecognized object type (not a OBO::Core::Relationship) was found: '", $_[1], "'";
		}
	}
	return $result;
}

=head2 head

  Usage    - $relationship->head($object) or $relationship->head()
  Returns  - the OBO::Core::Term (object or target) or OBO::Core::RelationshipType (object or target) targeted by this relationship
  Args     - the target term (OBO::Core::Term) or the target relationship type (OBO::Core::RelationshipType)
  Function - gets/sets the term/relationship type attached to the head of the relationship

=cut

sub head {
	$_[0]->{HEAD} = $_[1] if ($_[1]);
    return $_[0]->{HEAD};
}

=head2 tail

  Usage    - $relationship->tail($subject) or $relationship->tail()
  Returns  - the OBO::Core::Term (subject or source) or OBO::Core::RelationshipType (subject or source) sourced by this relationship or the OBO::Core::Instance (subject or source)
  Args     - the source term (OBO::Core::Term) or the source relationship type (OBO::Core::RelationshipType) or the source instance (OBO::Core::Instance)
  Function - gets/sets the term/relationship type/instance attached to the tail of the relationship

=cut

sub tail {
	$_[0]->{TAIL} = $_[1] if ($_[1]);
    return $_[0]->{TAIL};
}

=head2 link

  Usage    - $relationship->link($tail, $head) or $relationship->link()
  Returns  - the two Terms (OBO::Core::Term) or two RelationshipTypes (OBO::Core::RelationshipType) or an Instance (OBO::Core::Instance) and a Term (OBO::Core::Term) --subject and source-- connected by this relationship
  Args     - the source (tail, OBO::Core::Term/OBO::Core::RelationshipType) and target(head, OBO::Core::Term/OBO::Core::RelationshipType) term/relationship type
  Function - gets/sets the terms/relationship type attached to this relationship

=cut

sub link {
	($_[0]->{TAIL}, $_[0]->{HEAD}) = ($_[1], $_[2]) if ($_[1] && $_[2]);
    return ($_[0]->{TAIL}, $_[0]->{HEAD});
}

1;

__END__