| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package Lingua::Diversity::Result; |
|
2
|
|
|
|
|
|
|
|
|
3
|
1
|
|
|
1
|
|
16098
|
use Moose; |
|
|
0
|
|
|
|
|
|
|
|
|
0
|
|
|
|
|
|
|
|
4
|
|
|
|
|
|
|
|
|
5
|
|
|
|
|
|
|
our $VERSION = '0.04'; |
|
6
|
|
|
|
|
|
|
|
|
7
|
|
|
|
|
|
|
|
|
8
|
|
|
|
|
|
|
|
|
9
|
|
|
|
|
|
|
#============================================================================= |
|
10
|
|
|
|
|
|
|
# Attributes. |
|
11
|
|
|
|
|
|
|
#============================================================================= |
|
12
|
|
|
|
|
|
|
|
|
13
|
|
|
|
|
|
|
has 'diversity' => ( |
|
14
|
|
|
|
|
|
|
is => 'ro', |
|
15
|
|
|
|
|
|
|
isa => 'Num', |
|
16
|
|
|
|
|
|
|
reader => 'get_diversity', |
|
17
|
|
|
|
|
|
|
required => 1, |
|
18
|
|
|
|
|
|
|
); |
|
19
|
|
|
|
|
|
|
|
|
20
|
|
|
|
|
|
|
has 'variance' => ( |
|
21
|
|
|
|
|
|
|
is => 'ro', |
|
22
|
|
|
|
|
|
|
isa => 'Num', |
|
23
|
|
|
|
|
|
|
reader => 'get_variance', |
|
24
|
|
|
|
|
|
|
predicate => 'has_variance', |
|
25
|
|
|
|
|
|
|
); |
|
26
|
|
|
|
|
|
|
|
|
27
|
|
|
|
|
|
|
has 'count' => ( |
|
28
|
|
|
|
|
|
|
is => 'ro', |
|
29
|
|
|
|
|
|
|
isa => 'Num', |
|
30
|
|
|
|
|
|
|
reader => 'get_count', |
|
31
|
|
|
|
|
|
|
predicate => 'has_count', |
|
32
|
|
|
|
|
|
|
); |
|
33
|
|
|
|
|
|
|
|
|
34
|
|
|
|
|
|
|
|
|
35
|
|
|
|
|
|
|
|
|
36
|
|
|
|
|
|
|
|
|
37
|
|
|
|
|
|
|
#============================================================================= |
|
38
|
|
|
|
|
|
|
# Standard Moose cleanup. |
|
39
|
|
|
|
|
|
|
#============================================================================= |
|
40
|
|
|
|
|
|
|
|
|
41
|
|
|
|
|
|
|
no Moose; |
|
42
|
|
|
|
|
|
|
__PACKAGE__->meta->make_immutable; |
|
43
|
|
|
|
|
|
|
|
|
44
|
|
|
|
|
|
|
|
|
45
|
|
|
|
|
|
|
__END__ |
|
46
|
|
|
|
|
|
|
|
|
47
|
|
|
|
|
|
|
|
|
48
|
|
|
|
|
|
|
=head1 NAME |
|
49
|
|
|
|
|
|
|
|
|
50
|
|
|
|
|
|
|
Lingua::Diversity::Result - storing the result of a diversity measurement |
|
51
|
|
|
|
|
|
|
|
|
52
|
|
|
|
|
|
|
=head1 VERSION |
|
53
|
|
|
|
|
|
|
|
|
54
|
|
|
|
|
|
|
This documentation refers to Lingua::Diversity::Result version 0.04. |
|
55
|
|
|
|
|
|
|
|
|
56
|
|
|
|
|
|
|
=head1 SYNOPSIS |
|
57
|
|
|
|
|
|
|
|
|
58
|
|
|
|
|
|
|
use Lingua::Diversity::Result; |
|
59
|
|
|
|
|
|
|
|
|
60
|
|
|
|
|
|
|
# Given a Lingua::Diversity derived object and an array of data... |
|
61
|
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
# Measure diversity in the data and store the result in a Result object. |
|
63
|
|
|
|
|
|
|
my $result = $diversity->measure( \@data ); |
|
64
|
|
|
|
|
|
|
|
|
65
|
|
|
|
|
|
|
# A Result object always has a main 'diversity' field... |
|
66
|
|
|
|
|
|
|
print "Diversity\t", $result->get_diversity(), "\n"; |
|
67
|
|
|
|
|
|
|
|
|
68
|
|
|
|
|
|
|
# ... and may have a 'variance' and 'count' field... |
|
69
|
|
|
|
|
|
|
if ( $result->has_variance() ) { |
|
70
|
|
|
|
|
|
|
print "Variance\t", $result->get_variance(), "\n"; |
|
71
|
|
|
|
|
|
|
} |
|
72
|
|
|
|
|
|
|
if ( $result->has_count() ) { |
|
73
|
|
|
|
|
|
|
print "Count\t", $result->get_count(), "\n"; |
|
74
|
|
|
|
|
|
|
} |
|
75
|
|
|
|
|
|
|
|
|
76
|
|
|
|
|
|
|
|
|
77
|
|
|
|
|
|
|
=head1 DESCRIPTION |
|
78
|
|
|
|
|
|
|
|
|
79
|
|
|
|
|
|
|
This class implements the result of a L<Lingua::Diversity> derived object's |
|
80
|
|
|
|
|
|
|
diversity measurement. All diversity measures return a main value stored in |
|
81
|
|
|
|
|
|
|
the Result's I<diversity> attribute. Those measures for which the main value |
|
82
|
|
|
|
|
|
|
is an average may also return the corresponding variance and count (i.e. |
|
83
|
|
|
|
|
|
|
number of observations), which are then stored in the Result's I<variance> |
|
84
|
|
|
|
|
|
|
and I<count> attributes (this should be documented in the L<Lingua::Diversity> |
|
85
|
|
|
|
|
|
|
derived class). |
|
86
|
|
|
|
|
|
|
|
|
87
|
|
|
|
|
|
|
=head1 CREATOR |
|
88
|
|
|
|
|
|
|
|
|
89
|
|
|
|
|
|
|
The creator (C<new()>) returns a new Lingua::Diversity::Result object. |
|
90
|
|
|
|
|
|
|
In principle, the end user should never call it directly since it is invoked |
|
91
|
|
|
|
|
|
|
by the C<measure()> and C<measure_per_category()> methods of a given |
|
92
|
|
|
|
|
|
|
L<Lingua::Diversity> derived class. |
|
93
|
|
|
|
|
|
|
|
|
94
|
|
|
|
|
|
|
The constructor takes one required and two optional named parameters: |
|
95
|
|
|
|
|
|
|
|
|
96
|
|
|
|
|
|
|
=over 4 |
|
97
|
|
|
|
|
|
|
|
|
98
|
|
|
|
|
|
|
=item diversity (required) |
|
99
|
|
|
|
|
|
|
|
|
100
|
|
|
|
|
|
|
A number characterizing the diversity measured in the data. |
|
101
|
|
|
|
|
|
|
|
|
102
|
|
|
|
|
|
|
=item variance |
|
103
|
|
|
|
|
|
|
|
|
104
|
|
|
|
|
|
|
If the value of the I<diversity> attribute is an average, this attribute |
|
105
|
|
|
|
|
|
|
stores the corresponding variance. |
|
106
|
|
|
|
|
|
|
|
|
107
|
|
|
|
|
|
|
=item count |
|
108
|
|
|
|
|
|
|
|
|
109
|
|
|
|
|
|
|
If the value of the I<diversity> attribute is an average, this attribute |
|
110
|
|
|
|
|
|
|
stores the corresponding number of observations. In the case of a |
|
111
|
|
|
|
|
|
|
weighted average, the value of this attribute is the sum of weights, which |
|
112
|
|
|
|
|
|
|
needs not be an integer. |
|
113
|
|
|
|
|
|
|
|
|
114
|
|
|
|
|
|
|
=back |
|
115
|
|
|
|
|
|
|
|
|
116
|
|
|
|
|
|
|
=head1 ACCESSORS AND PREDICATES |
|
117
|
|
|
|
|
|
|
|
|
118
|
|
|
|
|
|
|
=over 4 |
|
119
|
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
=item get_diversity() |
|
121
|
|
|
|
|
|
|
|
|
122
|
|
|
|
|
|
|
Getter for the I<diversity> attribute. |
|
123
|
|
|
|
|
|
|
|
|
124
|
|
|
|
|
|
|
=item get_variance() and has_variance() |
|
125
|
|
|
|
|
|
|
|
|
126
|
|
|
|
|
|
|
Getter and predicate for the I<variance> attribute. |
|
127
|
|
|
|
|
|
|
|
|
128
|
|
|
|
|
|
|
=item get_count() and has_count() |
|
129
|
|
|
|
|
|
|
|
|
130
|
|
|
|
|
|
|
Getter and predicate for the I<count> attribute. |
|
131
|
|
|
|
|
|
|
|
|
132
|
|
|
|
|
|
|
=back |
|
133
|
|
|
|
|
|
|
|
|
134
|
|
|
|
|
|
|
=head1 DEPENDENCIES |
|
135
|
|
|
|
|
|
|
|
|
136
|
|
|
|
|
|
|
This module is part of the L<Lingua::Diversity> distribution, and extends |
|
137
|
|
|
|
|
|
|
L<Lingua::Diversity>. |
|
138
|
|
|
|
|
|
|
|
|
139
|
|
|
|
|
|
|
=head1 BUGS AND LIMITATIONS |
|
140
|
|
|
|
|
|
|
|
|
141
|
|
|
|
|
|
|
There are no known bugs in this module. |
|
142
|
|
|
|
|
|
|
|
|
143
|
|
|
|
|
|
|
It has been designed under the assumption that a unified set of fields would |
|
144
|
|
|
|
|
|
|
be convenient to characterize the output of various diversity measures. It |
|
145
|
|
|
|
|
|
|
turns out that this assumption makes it necessary to leave a lot of useful |
|
146
|
|
|
|
|
|
|
information out of the results, because the output of every diversity measure |
|
147
|
|
|
|
|
|
|
has some specificity (besides commonalities with other measures). In a future |
|
148
|
|
|
|
|
|
|
version, this could be solved by making the Lingua::Diversity::Class (at least |
|
149
|
|
|
|
|
|
|
partly) abstract, and by designing a derived class for each diversity |
|
150
|
|
|
|
|
|
|
measure. |
|
151
|
|
|
|
|
|
|
|
|
152
|
|
|
|
|
|
|
Please report problems to Aris Xanthos (aris.xanthos@unil.ch) |
|
153
|
|
|
|
|
|
|
|
|
154
|
|
|
|
|
|
|
Patches are welcome. |
|
155
|
|
|
|
|
|
|
|
|
156
|
|
|
|
|
|
|
=head1 AUTHOR |
|
157
|
|
|
|
|
|
|
|
|
158
|
|
|
|
|
|
|
Aris Xanthos (aris.xanthos@unil.ch) |
|
159
|
|
|
|
|
|
|
|
|
160
|
|
|
|
|
|
|
=head1 LICENSE AND COPYRIGHT |
|
161
|
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
Copyright (c) 2011 Aris Xanthos (aris.xanthos@unil.ch). |
|
163
|
|
|
|
|
|
|
|
|
164
|
|
|
|
|
|
|
This program is released under the GPL license (see |
|
165
|
|
|
|
|
|
|
L<http://www.gnu.org/licenses/gpl.html>). |
|
166
|
|
|
|
|
|
|
|
|
167
|
|
|
|
|
|
|
This program is distributed in the hope that it will be useful, but WITHOUT |
|
168
|
|
|
|
|
|
|
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
|
169
|
|
|
|
|
|
|
FOR A PARTICULAR PURPOSE. |
|
170
|
|
|
|
|
|
|
|
|
171
|
|
|
|
|
|
|
=head1 SEE ALSO |
|
172
|
|
|
|
|
|
|
|
|
173
|
|
|
|
|
|
|
L<Lingua::Diversity> |
|
174
|
|
|
|
|
|
|
|