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=pod |
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=head1 NAME |
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ETL::Pipeline::Input::File - Role for file based input sources |
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=head1 SYNOPSIS |
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9
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# In the input source... |
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use Moose; |
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with 'ETL::Pipeline::Input'; |
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with 'ETL::Pipeline::Input::File'; |
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... |
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# In the ETL::Pipeline script... |
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ETL::Pipeline->new( { |
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work_in => {root => 'C:\Data', iname => qr/Ficticious/}, |
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input => ['Excel', iname => qr/\.xlsx?$/ ], |
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mapping => {Name => 'A', Address => 'B', ID => 'C' }, |
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constants => {Type => 1, Information => 'Demographic' }, |
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output => ['SQL', table => 'NewData' ], |
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} )->process; |
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# Or with a specific file... |
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ETL::Pipeline->new( { |
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work_in => {root => 'C:\Data', iname => qr/Ficticious/}, |
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input => ['Excel', iname => 'ExportedData.xlsx' ], |
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mapping => {Name => 'A', Address => 'B', ID => 'C' }, |
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constants => {Type => 1, Information => 'Demographic' }, |
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output => ['SQL', table => 'NewData' ], |
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} )->process; |
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=head1 DESCRIPTION |
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35
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This role adds functionality and attributes common to all file based input |
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sources. It is a quick and easy way to create new sources with the ability |
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to search directories. Useful when the file name changes. |
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39
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B<ETL::Pipeline::Input::File> works with a single source file. To process an |
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entire directory of files, use L<ETL::Pipeline::Input::FileListing> instead. |
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=cut |
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package ETL::Pipeline::Input::File; |
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4
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4
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3888
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use 5.014000; |
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47
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48
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4
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use Carp; |
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298
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49
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use Moose::Role; |
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40
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50
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24026
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use MooseX::Types::Path::Class qw/File/; |
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84
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51
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5614
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use Path::Class::Rule; |
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2194
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53
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54
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our $VERSION = '3.00'; |
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55
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56
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57
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=head1 METHODS & ATTRIBUTES |
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58
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59
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=head2 Arguments for L<ETL::Pipeline/input> |
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60
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61
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B<ETL::Pipeline::Input::File> accepts any of the tests provided by |
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62
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L<Path::Iterator::Rule>. The value of the argument is passed directly into the |
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63
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test. For boolean tests (e.g. readable, exists, etc.), pass an C<undef> value. |
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64
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65
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B<ETL::Pipeline::Input::File> automatically applies the C<file> filter. Do not |
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66
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pass C<file> through L<ETL::Pipeline/input>. |
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67
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68
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C<iname> is the most common one that I use. It matches the file name, supports |
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69
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wildcards and regular expressions, and is case insensitive. |
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70
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71
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# Search using a regular expression... |
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72
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$etl->input( 'Excel', iname => qr/\.xlsx$/ ); |
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73
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74
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# Search using a file glob... |
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75
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$etl->input( 'Excel', iname => '*.xlsx' ); |
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76
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77
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The code throws an error if no files match the criteria. Only the first match |
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78
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is used. If you want to match more than one file, use |
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79
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L<ETL::Pipeline::Input::File::List> instead. |
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80
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81
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=cut |
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82
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83
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# BUILD in the consuming class will override this one. I add a fake BUILD in |
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84
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# case the class doesn't have one. The method modifier then runs the code to |
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85
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# extract search criteria from the constructor arguments. The modifier will |
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86
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# run even if the consuming class has its own BUILD. |
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87
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# https://www.perlmonks.org/?node_id=837369 |
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88
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9
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0
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sub BUILD {} |
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89
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90
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after 'BUILD' => sub { |
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91
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my $self = shift; |
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92
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my $arguments = shift; |
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93
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94
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while (my ($name, $value) = each %$arguments) { |
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95
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$self->_add_criteria( $name, $value ) |
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96
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if $name ne 'file' && Path::Class::Rule->can( $name ); |
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97
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} |
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98
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}; |
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99
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100
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101
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# Execute the actual search AFTER everything is set in stone. This lets a script |
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102
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# create the input source before it calls "work_in". |
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103
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before 'run' => sub { |
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104
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my ($self, $etl) = @_; |
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105
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106
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if (defined $self->path) { |
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107
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$self->_set_path( $self->path->absolute( $etl->data_in ) ) |
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108
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if $self->path->is_relative; |
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109
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} else { |
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110
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# Build the search rule from the criteria passed to the constructor. |
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111
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my $rule = Path::Class::Rule->new->file; |
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112
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foreach my $pair ($self->_search_criteria) { |
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113
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my $name = $pair->[0]; |
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114
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my $value = $pair->[1]; |
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115
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116
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eval "\$rule = \$rule->$name( \$value )"; |
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117
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croak $@ unless $@ eq ''; |
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118
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} |
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119
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my @matches = $rule->all( $etl->data_in ); |
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120
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121
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# Find the first file that matches all of the criteria. |
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122
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if (scalar( @matches ) < 1) { |
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123
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croak 'No files matched the search criteria'; |
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124
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} elsif (!-r $matches[0]) { |
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125
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croak "You do not have permission to read '$matches[0]'"; |
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126
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} else { |
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127
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$self->_set_path( $matches[0] ); |
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128
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$self->source( $matches[0]->relative( $etl->work_in )->stringify ); |
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129
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$etl->status( 'INFO', 'File name' ); |
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130
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} |
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131
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} |
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132
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}; |
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133
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134
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135
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=head3 path |
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136
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137
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Optional. When passed to L<ETL::Pipeline/input>, this file becomes the input |
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138
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source. No search or matching is performed. If you specify a relative path, it |
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139
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is relative to L</data_in>. |
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140
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141
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Once the object has been created, this attribute holds the file that matched |
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142
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search criteria. It should be used by your input source class as the file name. |
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143
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144
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# File inside of "data_in"... |
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145
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$etl->input( 'Excel', path => 'Data.xlsx' ); |
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146
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147
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# Absolute path name... |
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148
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$etl->input( 'Excel', path => 'C:\Data.xlsx' ); |
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149
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150
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# Inside the input source class... |
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151
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open my $io, '<', $self->path; |
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152
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153
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=cut |
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154
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155
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has 'path' => ( |
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156
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coerce => 1, |
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157
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is => 'ro', |
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158
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isa => File, |
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159
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writer => '_set_path', |
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160
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); |
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161
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162
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163
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=head3 skipping |
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164
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165
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Optional. B<skipping> jumps over a certain number of rows/lines in the beginning |
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166
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of the file. Report formats often contain extra headers - even before the column |
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167
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names. B<skipping> ignores those and starts processing at the data. |
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168
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169
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B<Note:> B<skipping> is applied I<before> reading column names. |
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170
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171
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B<skipping> accepts either an integer or code reference. An integer represents |
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172
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the number of rows/records to ignore. For a code reference, the code discards |
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173
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records until the subroutine returns a I<true> value. |
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174
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175
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# Bypass the first three rows. |
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176
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$etl->input( 'Excel', skipping => 3 ); |
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177
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178
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# Bypass until we find something in column 'C'. |
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179
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$etl->input( 'Excel', skipping => sub { hascontent( $_->get( 'C' ) ) } ); |
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180
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181
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The exact nature of the I<record> depends on the input file. For example files, |
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182
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Excel files will send a data row as a hash. But a CSV file would send a single |
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183
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line of plain text with no parsing. See the input source to find out exactly |
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184
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what it sends. |
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185
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186
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If your input source implements B<skipping>, you can pass whatever parameters |
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187
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you want. For consistency, I recommend passing the raw data. If you are jumping |
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188
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over report headers, they may not be formatted. |
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189
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190
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=cut |
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191
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192
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has 'skipping' => ( |
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193
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default => 0, |
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194
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is => 'ro', |
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195
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isa => 'CodeRef|Int', |
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196
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); |
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197
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198
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|
199
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#------------------------------------------------------------------------------- |
|
200
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# Internal methods and attributes |
|
201
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202
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# Search criteria for the file list. I capture the criteria from the constructor |
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203
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# but don't build the iterator until the loop kicks off. Since the search |
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204
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# depends on "data_in", this allows the user to setup the pipeline in whatever |
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# order they want and it will do the right thing. |
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has '_criteria' => ( |
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default => sub { {} }, |
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handles => {_add_criteria => 'set', _search_criteria => 'kv'}, |
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is => 'ro', |
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isa => 'HashRef[Any]', |
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traits => [qw/Hash/], |
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); |
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214
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215
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=head1 SEE ALSO |
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217
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L<ETL::Pipeline>, L<ETL::Pipeline::Input>, L<ETL::Pipeline::Input::File::List>, |
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L<Path::Iterator::Rule> |
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220
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=head1 AUTHOR |
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222
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Robert Wohlfarth <robert.j.wohlfarth@vumc.org> |
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224
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=head1 LICENSE |
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226
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Copyright 2021 (c) Vanderbilt University Medical Center |
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228
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This program is free software; you can redistribute it and/or modify it under |
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the same terms as Perl itself. |
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231
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=cut |
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233
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4
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4
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53
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no Moose; |
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4
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11
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4
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45
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234
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235
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# Required by Perl to load the module. |
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1; |