File Coverage

lib/App/SimulateReads.pm
Criterion Covered Total %
statement 3 4 75.0
branch n/a
condition n/a
subroutine 1 2 50.0
pod 1 1 100.0
total 5 7 71.4


line stmt bran cond sub pod time code
1             package App::SimulateReads;
2             # ABSTRACT: App builder that simulates single-end and paired-end reads.
3              
4 1     1   4927 use App::SimulateReads::Base 'class';
  1         2  
  1         8  
5              
6             extends 'App::SimulateReads::CLI::App';
7              
8             our $VERSION = '0.05'; # VERSION
9              
10             sub command_map {
11 0     0 1   digest => 'App::SimulateReads::Command::Digest',
12             qualitydb => 'App::SimulateReads::Command::QualityDB'
13             }
14              
15             __END__
16              
17             =pod
18              
19             =encoding UTF-8
20              
21             =head1 NAME
22              
23             App::SimulateReads - App builder that simulates single-end and paired-end reads.
24              
25             =head1 VERSION
26              
27             version 0.05
28              
29             =head1 SYNOPSIS
30              
31             simulate_reads [options]
32             simulate_reads help <command>
33             simulate_reads <command> ...
34              
35             Options:
36             -h, --help brief help message
37             -M, --man full documentation
38            
39             Help commands
40             help show application or command-specific help
41             man show application or command-specific documentation
42              
43             Main commands:
44             digest digest a fasta file into single|paired-end reads
45             qualitydb manage quality profile database
46              
47             =head1 DESCRIPTION
48              
49             B<simulate_reads> will read the given input file and do something
50             useful with the contents thereof.
51              
52             =head1 AUTHOR
53              
54             Thiago L. A. Miller <tmiller@mochsl.org.br>
55              
56             =head1 COPYRIGHT AND LICENSE
57              
58             This software is Copyright (c) 2017 by Teaching and Research Institute from Sírio-Libanês Hospital.
59              
60             This is free software, licensed under:
61              
62             The GNU General Public License, Version 3, June 2007
63              
64             =cut