File Coverage

blib/lib/UMLS/Association/ErrorHandler.pm

Criterion	Covered	Total	%
statement	19	65	29.2
branch	0	26	0.0
condition			n/a
subroutine	6	9	66.6
pod	0	1	0.0
total	25	101	24.7

# UMLS::Association::ErrorHandler
#
# Perl module that provides a perl interface to the CUI network extracted
# from the MetaMapped Medline Baseline
#
# This program borrows heavily from the UMLS::Interface package.
#
# Copyright (c) 2015,
#
# Bridget T. McInnes, Virginia Commonwealth University
# btmcinnes at vcu.edu
#
# Keith Herbert, Virginia Commonwealth University
# herbertkb at vcu.edu
#
# This program is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation; either version 2
# of the License, or (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to
#
# The Free Software Foundation, Inc.,
# 59 Temple Place - Suite 330,
# Boston, MA  02111-1307, USA.

package UMLS::Association::ErrorHandler;

use Fcntl;
use strict;
use warnings;
use DBI;
use bytes;

#  Errors and their error codes
my $e1  = "Database error (Error Code 1).";
my $e2  = "Self is undefined (Error Code 2).";
my $e3  = "A db is required (Error Code 3).";
my $e4  = "Undefined input value (Error Code 4).";
my $e5  = "NPP is zero or less error (Error Code 5).";
my $e6  = "Invalid CUI (Error Code 6).";
my $e7  = "UMLS::Association Database Content Error (Error Code 7).";
my $e8  = "UMLS::Association Package Error (Error Code 8).";
my $e9  = "Index Error (Error Code 9).";
my $e10 = "Option Error (Error Code 10).";
my $e11 = "Unsupported Option Error (Error Code 11).";

#  throws an error and exits the program
#  input : $pkg       <- package the error originated
#          $function  <- function the error originated
#          $string    <- error message
#          $errorcode <- error code
#  output:
sub _error {

    my $self      = shift;
    my $pkg       = shift;
    my $function  = shift;
    my $string    = shift;
    my $errorcode = shift;

    my $errorstring = "";

    if($errorcode eq 1)  { $errorstring = $e1;  }
    if($errorcode eq 2)  { $errorstring = $e2;  }
    if($errorcode eq 3)  { $errorstring = $e3;  }
    if($errorcode eq 4)  { $errorstring = $e4;  }
    if($errorcode eq 5)  { $errorstring = $e5;  }
    if($errorcode eq 6)  { $errorstring = $e6;  }
    if($errorcode eq 7)  { $errorstring = $e7;  }
    if($errorcode eq 8)  { $errorstring = $e8;  }
    if($errorcode eq 9)  { $errorstring = $e9;  }
    if($errorcode eq 10) { $errorstring = $e10; }
    if($errorcode eq 11) { $errorstring = $e11; }

    print STDERR "ERROR: $pkg->$function\n";
    print STDERR "$errorstring\n";
    print STDERR "$string\n";

    exit;
}

#  checks the database for an error
#  input : $pkg      => the Finder program
#          $function => the function in the finder program
#          $db       => the database handler
#  output:
sub _checkDbError {

    my $self     = shift;
    my $pkg      = shift;
    my $function = shift;
    my $db       = shift;

    my $errorcode = 1;

    if($db->err()) {
	my $errstring = "Error executing database query: $db->errstr()).";
	$self->_error($pkg, $function, $errstring, $errorcode);
    }
    else {
	return;
    }
}

#  subroutine to check if CUI is valid
#  input : $concept       <- string containing a cui
#  output: true | false   <- integer indicating if the cui is valid
sub _validCui {

    my $self = shift;
    my $concept = shift;

    if($concept=~/C[0-9][0-9][0-9][0-9][0-9][0-9][0-9]/) {
	return 1;
    }
    else {
	return 0;
    }
}

#  sets up the error handler module
#  input : $parameters <- reference to a hash
#  output: $self
sub new {

    my $self = {};
    my $className = shift;

    # Bless the object.
    bless($self, $className);

    return $self;
}
1;
__END__