| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
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1
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package GBrowseGuessDirectories; |
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2
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3
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1
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1
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464
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use IO::Socket::INET; |
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1
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6324
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1
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4
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4
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1
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1
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345
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use File::Spec; |
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1
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2
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1
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716
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5
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6
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my $PREFIX; |
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7
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8
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sub prefix { |
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9
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0
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0
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0
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my $self = shift; |
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10
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0
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my $d = $PREFIX; |
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11
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0
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0
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$PREFIX = shift if @_; |
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12
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0
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return $d; |
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13
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} |
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14
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15
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# this package never gets installed - it's just used by Makefile.PL |
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16
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sub conf { |
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17
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0
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0
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0
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my $self = shift; |
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18
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0
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0
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return File::Spec->catfile($PREFIX,'etc','gbrowse2') if $PREFIX; |
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19
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20
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0
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0
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if ($^O =~ /mswin/i) { # windows system |
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21
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0
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return File::Spec->catfile('C:','Program Files','GBrowse2','conf'); |
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22
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} else { |
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23
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0
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for ( |
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24
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'/etc', |
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25
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'/usr/etc', |
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26
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'/usr/local/etc', |
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27
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) { |
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28
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0
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0
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return File::Spec->catfile($_,'gbrowse2') if -d $_; |
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29
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} |
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30
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} |
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31
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0
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0
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return File::Spec->catfile($self->prefix || '/usr/local/etc','gbrowse2'); # fallback |
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32
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} |
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33
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34
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sub etc { |
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35
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0
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0
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0
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shift; |
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36
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0
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0
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return File::Spec->catfile($PREFIX,'etc') if $PREFIX; |
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37
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0
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return '/etc'; # no exceptions |
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38
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} |
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39
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40
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sub tmp { |
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41
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0
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0
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0
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my $self = shift; |
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42
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0
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0
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return File::Spec->catfile($PREFIX,'tmp','gbrowse2') if $PREFIX; |
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43
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0
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0
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return '/srv/gbrowse2/tmp' if $ENV{DEB_BUILD_ARCH}; # FHS system |
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44
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0
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0
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0
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return '/var/tmp/gbrowse2' if -e '/var/tmp' && -w '/var/tmp'; |
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45
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0
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return File::Spec->catfile(File::Spec->tmpdir,'gbrowse2'); |
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46
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} |
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47
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48
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sub persistent { |
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49
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0
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0
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0
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my $self = shift; |
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50
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0
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0
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return '/srv/gbrowse2' if $ENV{DEB_BUILD_ARCH}; # FHS system |
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51
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0
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0
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my $prefix = $self->prefix || '/var'; |
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52
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0
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return File::Spec->catfile($prefix,'lib','gbrowse2'); |
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53
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} |
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54
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55
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sub databases { |
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56
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0
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0
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0
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my $self = shift; |
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57
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0
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return File::Spec->catfile($self->persistent,'databases'); |
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58
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} |
|
59
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60
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sub apache { |
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61
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0
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0
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0
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my $self = shift; |
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62
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0
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0
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return -x '/usr/sbin/httpd' ? '/usr/sbin/httpd' |
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0
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0
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63
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: -x '/usr/sbin/apache2' ? '/usr/sbin/apache2' |
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64
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: -x '/usr/sbin/apache' ? '/usr/sbin/apache' |
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65
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: undef; |
|
66
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} |
|
67
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68
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|
sub apache_root { |
|
69
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0
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0
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0
|
0
|
|
if ($^O =~ /mswin/i) { # windows system |
|
70
|
0
|
|
|
|
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|
for ( |
|
71
|
|
|
|
|
|
|
'C:/Program Files/Apache Software Foundation/Apache2.5', |
|
72
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|
'C:/Program Files/Apache Software Foundation/Apache2.4', |
|
73
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'C:/Program Files/Apache Software Foundation/Apache2.3', |
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74
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'C:/Program Files/Apache Software Foundation/Apache2.2', |
|
75
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|
'C:/Program Files/Apache Software Foundation/Apache2.1', |
|
76
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|
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'C:/Program Files/Apache Group/Apache2', |
|
77
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'C:/Program Files/Apache Group/Apache', |
|
78
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'C:/Apache/conf', |
|
79
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'C:/Apache2/conf') { |
|
80
|
0
|
0
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|
return $_ if -d $_; |
|
81
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|
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} |
|
82
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|
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} else { |
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83
|
0
|
|
|
|
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|
for ( |
|
84
|
|
|
|
|
|
|
'/etc/apache2', |
|
85
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|
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|
'/usr/local/apache2', # standard apache2 install |
|
86
|
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|
'/usr/local/apache', # standard apache install |
|
87
|
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|
'/opt/apache2', |
|
88
|
|
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|
|
'/opt/apache', |
|
89
|
|
|
|
|
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) { |
|
90
|
0
|
0
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|
return $_ if -d $_; |
|
91
|
|
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|
} |
|
92
|
|
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|
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|
|
} |
|
93
|
0
|
|
|
|
|
|
return; |
|
94
|
|
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|
} |
|
95
|
|
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|
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|
|
96
|
|
|
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|
|
sub htdocs { |
|
97
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0
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|
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0
|
0
|
|
my $self = shift; |
|
98
|
0
|
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|
local $^W = 0; |
|
99
|
0
|
0
|
|
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|
|
return File::Spec->catfile($PREFIX,'htdocs') if $PREFIX; |
|
100
|
|
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|
101
|
0
|
0
|
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|
|
return '/srv/gbrowse2/htdocs' if $ENV{DEB_BUILD_ARCH}; |
|
102
|
0
|
|
|
|
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|
my $root = $self->apache_root; |
|
103
|
0
|
|
|
|
|
|
foreach ('htdocs','html') { |
|
104
|
0
|
0
|
|
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|
|
return File::Spec->catfile($root,$_) |
|
105
|
|
|
|
|
|
|
if -e File::Spec->catfile($root,$_); |
|
106
|
|
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|
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|
|
} |
|
107
|
|
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|
|
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|
|
108
|
0
|
|
|
|
|
|
for ( |
|
109
|
|
|
|
|
|
|
'/var/www/html', # RedHat linux |
|
110
|
|
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|
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|
|
'/var/www/htdocs', # Slackware linux |
|
111
|
|
|
|
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|
|
'/var/www', # Ubuntu/debian |
|
112
|
|
|
|
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|
|
'/var/www', # Ubuntu |
|
113
|
|
|
|
|
|
|
'/Library/Webserver/Documents', # MacOSX |
|
114
|
|
|
|
|
|
|
) { |
|
115
|
0
|
0
|
|
|
|
|
return File::Spec->catfile($_,'gbrowse2') if -d $_; |
|
116
|
|
|
|
|
|
|
} |
|
117
|
0
|
|
|
|
|
|
return '/usr/local/apache/htdocs'; # fallback |
|
118
|
|
|
|
|
|
|
} |
|
119
|
|
|
|
|
|
|
|
|
120
|
|
|
|
|
|
|
sub cgibin { |
|
121
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
122
|
0
|
|
|
|
|
|
my $root = $self->apache_root; |
|
123
|
0
|
|
|
|
|
|
foreach ('cgi-bin','cgi-perl','cgi') { |
|
124
|
0
|
0
|
|
|
|
|
return File::Spec->catfile($root,$_) |
|
125
|
|
|
|
|
|
|
if -e File::Spec->catfile($root,$_); |
|
126
|
|
|
|
|
|
|
} |
|
127
|
0
|
|
|
|
|
|
for ( |
|
128
|
|
|
|
|
|
|
'/var/www/cgi-bin', # RedHat & Slackware linux |
|
129
|
|
|
|
|
|
|
'/usr/lib/cgi-bin', # Ubuntu/debian |
|
130
|
|
|
|
|
|
|
'/Library/Webserver/CGI-Executables', # MacOSX |
|
131
|
|
|
|
|
|
|
'/usr/lib/cgi-bin', # Ubuntu |
|
132
|
|
|
|
|
|
|
) { |
|
133
|
0
|
0
|
|
|
|
|
return "$_/gb2" if -d $_; |
|
134
|
|
|
|
|
|
|
} |
|
135
|
0
|
|
|
|
|
|
return '/usr/local/apache/cgi-bin/gb2'; #fallback |
|
136
|
|
|
|
|
|
|
} |
|
137
|
|
|
|
|
|
|
|
|
138
|
|
|
|
|
|
|
# try a few ports until we find an open one |
|
139
|
|
|
|
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|
|
sub portdemo { |
|
140
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
141
|
0
|
|
|
|
|
|
my @candidates = (80,8000,8080,8001,8008,8081,8888,8181); |
|
142
|
0
|
|
|
|
|
|
for my $port (@candidates) { |
|
143
|
0
|
|
|
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|
|
my $h = IO::Socket::INET->new(LocalPort=>$port); |
|
144
|
0
|
0
|
|
|
|
|
return $port if $h; |
|
145
|
|
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|
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|
|
} |
|
146
|
|
|
|
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|
|
} |
|
147
|
|
|
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|
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|
148
|
|
|
|
|
|
|
sub wwwuser { |
|
149
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
150
|
0
|
|
|
|
|
|
for (qw(www-data www httpd apache apache2 System nobody )) { |
|
151
|
0
|
0
|
|
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|
|
return $_ if getpwnam($_); |
|
152
|
|
|
|
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|
|
} |
|
153
|
|
|
|
|
|
|
# fallback -- user current real user |
|
154
|
0
|
|
|
|
|
|
return (getpwuid($<))[0]; |
|
155
|
|
|
|
|
|
|
} |
|
156
|
|
|
|
|
|
|
|
|
157
|
|
|
|
|
|
|
sub installconf { |
|
158
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
159
|
0
|
|
|
|
|
|
return 'y'; |
|
160
|
|
|
|
|
|
|
} |
|
161
|
|
|
|
|
|
|
|
|
162
|
|
|
|
|
|
|
sub installetc { |
|
163
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
164
|
0
|
|
|
|
|
|
return 'y'; |
|
165
|
|
|
|
|
|
|
} |
|
166
|
|
|
|
|
|
|
|
|
167
|
|
|
|
|
|
|
sub apachemodules { |
|
168
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
169
|
0
|
|
|
|
|
|
my $root = $self->apache_root; |
|
170
|
0
|
|
|
|
|
|
foreach ('modules','libexec') { |
|
171
|
0
|
0
|
|
|
|
|
return File::Spec->catfile($root,$_) |
|
172
|
|
|
|
|
|
|
if -d File::Spec->catfile($root,$_); |
|
173
|
|
|
|
|
|
|
} |
|
174
|
|
|
|
|
|
|
|
|
175
|
0
|
0
|
|
|
|
|
return '/etc/httpd/modules' if -d '/etc/httpd/modules'; |
|
176
|
|
|
|
|
|
|
|
|
177
|
|
|
|
|
|
|
|
|
178
|
0
|
|
|
|
|
|
for my $first ('/usr/lib','/usr/share', |
|
179
|
|
|
|
|
|
|
'/usr/local/lib','/usr/local/share') { |
|
180
|
0
|
|
|
|
|
|
for my $second ('apache','apache2') { |
|
181
|
0
|
|
|
|
|
|
for my $third ('modules','libexec') { |
|
182
|
0
|
|
|
|
|
|
my $candidate = File::Spec->catfile($first,$second,$third); |
|
183
|
0
|
0
|
|
|
|
|
return $candidate if -d $candidate; |
|
184
|
|
|
|
|
|
|
} |
|
185
|
|
|
|
|
|
|
} |
|
186
|
|
|
|
|
|
|
} |
|
187
|
0
|
|
|
|
|
|
return '/usr/lib/apache/modules'; #fallback |
|
188
|
|
|
|
|
|
|
} |
|
189
|
|
|
|
|
|
|
|
|
190
|
|
|
|
|
|
|
# most (all?) distributions have a way to add config file snippets |
|
191
|
|
|
|
|
|
|
# to httpd.conf without modifying the main file |
|
192
|
|
|
|
|
|
|
sub apache_includes { |
|
193
|
0
|
|
|
0
|
0
|
|
my $self = shift; |
|
194
|
0
|
0
|
|
|
|
|
return '/etc/apache2/other' if -d '/etc/apache2/other'; # why cant macos do things like everybody else? |
|
195
|
0
|
0
|
|
|
|
|
return '/etc/apache2/conf.d' if -d '/etc/apache2/conf.d'; |
|
196
|
0
|
0
|
|
|
|
|
return '/etc/apache2/conf-enabled' if -d '/etc/apache2/conf-enabled'; |
|
197
|
0
|
0
|
|
|
|
|
return '/etc/apache/conf.d' if -d '/etc/apache/conf.d'; |
|
198
|
0
|
0
|
|
|
|
|
return '/etc/httpd/conf.d' if -d '/etc/httpd/conf.d'; |
|
199
|
0
|
|
|
|
|
|
return; |
|
200
|
|
|
|
|
|
|
} |
|
201
|
|
|
|
|
|
|
|
|
202
|
|
|
|
|
|
|
1; |