| line |
stmt |
bran |
cond |
sub |
pod |
time |
code |
|
1
|
|
|
|
|
|
|
package Finnigan::ScanEventPreamble; |
|
2
|
|
|
|
|
|
|
|
|
3
|
2
|
|
|
2
|
|
9
|
use strict; |
|
|
2
|
|
|
|
|
5
|
|
|
|
2
|
|
|
|
|
79
|
|
|
4
|
2
|
|
|
2
|
|
9
|
use warnings FATAL => qw( all ); |
|
|
2
|
|
|
|
|
4
|
|
|
|
2
|
|
|
|
|
88
|
|
|
5
|
|
|
|
|
|
|
our $VERSION = 0.0206; |
|
6
|
|
|
|
|
|
|
|
|
7
|
2
|
|
|
2
|
|
10
|
use Finnigan; |
|
|
2
|
|
|
|
|
2
|
|
|
|
2
|
|
|
|
|
80
|
|
|
8
|
2
|
|
|
2
|
|
10
|
use base 'Finnigan::Decoder'; |
|
|
2
|
|
|
|
|
4
|
|
|
|
2
|
|
|
|
|
155
|
|
|
9
|
|
|
|
|
|
|
|
|
10
|
2
|
|
|
2
|
|
21
|
use overload ('""' => 'stringify'); |
|
|
2
|
|
|
|
|
4
|
|
|
|
2
|
|
|
|
|
13
|
|
|
11
|
|
|
|
|
|
|
|
|
12
|
|
|
|
|
|
|
my %SYMBOL = ( |
|
13
|
|
|
|
|
|
|
bool => { |
|
14
|
|
|
|
|
|
|
0 => "False", |
|
15
|
|
|
|
|
|
|
1 => "True" |
|
16
|
|
|
|
|
|
|
}, |
|
17
|
|
|
|
|
|
|
|
|
18
|
|
|
|
|
|
|
"on/off" => { |
|
19
|
|
|
|
|
|
|
0 => "Off", |
|
20
|
|
|
|
|
|
|
1 => "On", |
|
21
|
|
|
|
|
|
|
2 => "undefined", |
|
22
|
|
|
|
|
|
|
}, |
|
23
|
|
|
|
|
|
|
|
|
24
|
|
|
|
|
|
|
detector => { |
|
25
|
|
|
|
|
|
|
0 => "valid", |
|
26
|
|
|
|
|
|
|
1 => "undefined", |
|
27
|
|
|
|
|
|
|
}, |
|
28
|
|
|
|
|
|
|
|
|
29
|
|
|
|
|
|
|
analyzer => { |
|
30
|
|
|
|
|
|
|
0 => "ITMS", |
|
31
|
|
|
|
|
|
|
1 => "TQMS", |
|
32
|
|
|
|
|
|
|
2 => "SQMS", |
|
33
|
|
|
|
|
|
|
3 => "TOFMS", |
|
34
|
|
|
|
|
|
|
4 => "FTMS", |
|
35
|
|
|
|
|
|
|
5 => "Sector", |
|
36
|
|
|
|
|
|
|
6 => "undefined" |
|
37
|
|
|
|
|
|
|
}, |
|
38
|
|
|
|
|
|
|
|
|
39
|
|
|
|
|
|
|
polarity => { |
|
40
|
|
|
|
|
|
|
0 => "negative", |
|
41
|
|
|
|
|
|
|
1 => "positive", |
|
42
|
|
|
|
|
|
|
2 => "undefined", |
|
43
|
|
|
|
|
|
|
}, |
|
44
|
|
|
|
|
|
|
|
|
45
|
|
|
|
|
|
|
"scan mode" => { |
|
46
|
|
|
|
|
|
|
0 => "centroid", |
|
47
|
|
|
|
|
|
|
1 => "profile", |
|
48
|
|
|
|
|
|
|
2 => "undefined", |
|
49
|
|
|
|
|
|
|
}, |
|
50
|
|
|
|
|
|
|
|
|
51
|
|
|
|
|
|
|
"scan type" => { |
|
52
|
|
|
|
|
|
|
0 => "Full", |
|
53
|
|
|
|
|
|
|
1 => "Zoom", |
|
54
|
|
|
|
|
|
|
2 => "SIM", |
|
55
|
|
|
|
|
|
|
3 => "SRM", |
|
56
|
|
|
|
|
|
|
4 => "CRM", |
|
57
|
|
|
|
|
|
|
5 => "undefined", |
|
58
|
|
|
|
|
|
|
6 => "Q1", |
|
59
|
|
|
|
|
|
|
7 => "Q3", |
|
60
|
|
|
|
|
|
|
}, |
|
61
|
|
|
|
|
|
|
|
|
62
|
|
|
|
|
|
|
"ms power" => { |
|
63
|
|
|
|
|
|
|
0 => "undefined", |
|
64
|
|
|
|
|
|
|
1 => "MS1", |
|
65
|
|
|
|
|
|
|
2 => "MS2", |
|
66
|
|
|
|
|
|
|
3 => "MS3", |
|
67
|
|
|
|
|
|
|
4 => "MS4", |
|
68
|
|
|
|
|
|
|
5 => "MS5", |
|
69
|
|
|
|
|
|
|
6 => "MS6", |
|
70
|
|
|
|
|
|
|
7 => "MS7", |
|
71
|
|
|
|
|
|
|
8 => "MS8", |
|
72
|
|
|
|
|
|
|
}, |
|
73
|
|
|
|
|
|
|
|
|
74
|
|
|
|
|
|
|
ionization => { |
|
75
|
|
|
|
|
|
|
0 => "EI", |
|
76
|
|
|
|
|
|
|
1 => "CI", |
|
77
|
|
|
|
|
|
|
2 => "FABI", |
|
78
|
|
|
|
|
|
|
3 => "ESI", |
|
79
|
|
|
|
|
|
|
4 => "APCI", |
|
80
|
|
|
|
|
|
|
5 => "NSI", |
|
81
|
|
|
|
|
|
|
6 => "TSI", |
|
82
|
|
|
|
|
|
|
7 => "FDI", |
|
83
|
|
|
|
|
|
|
8 => "MALDI", |
|
84
|
|
|
|
|
|
|
9 => "GDI", |
|
85
|
|
|
|
|
|
|
10 => "undefined" |
|
86
|
|
|
|
|
|
|
}, |
|
87
|
|
|
|
|
|
|
); |
|
88
|
|
|
|
|
|
|
|
|
89
|
|
|
|
|
|
|
my %TYPE = ( |
|
90
|
|
|
|
|
|
|
"corona" => "on/off", |
|
91
|
|
|
|
|
|
|
"detector" => "detector", |
|
92
|
|
|
|
|
|
|
"polarity" => "polarity", |
|
93
|
|
|
|
|
|
|
"scan mode" => "scan mode", |
|
94
|
|
|
|
|
|
|
"ms power" => "ms power", |
|
95
|
|
|
|
|
|
|
"scan type" => "scan type", |
|
96
|
|
|
|
|
|
|
"dependent" => "bool", |
|
97
|
|
|
|
|
|
|
"ionization" => "ionization", |
|
98
|
|
|
|
|
|
|
"wideband" => "on/off", |
|
99
|
|
|
|
|
|
|
"analyzer" => "analyzer", |
|
100
|
|
|
|
|
|
|
); |
|
101
|
|
|
|
|
|
|
|
|
102
|
|
|
|
|
|
|
my @common_fields = ( |
|
103
|
|
|
|
|
|
|
"unknown byte[0]" => ['C', 'UInt8'], |
|
104
|
|
|
|
|
|
|
"unknown byte[1]" => ['C', 'UInt8'], |
|
105
|
|
|
|
|
|
|
"corona" => ['C', 'UInt8'], |
|
106
|
|
|
|
|
|
|
"detector" => ['C', 'UInt8'], |
|
107
|
|
|
|
|
|
|
"polarity" => ['C', 'UInt8'], |
|
108
|
|
|
|
|
|
|
"scan mode" => ['C', 'UInt8'], |
|
109
|
|
|
|
|
|
|
"ms power" => ['C', 'UInt8'], |
|
110
|
|
|
|
|
|
|
"scan type" => ['C', 'UInt8'], |
|
111
|
|
|
|
|
|
|
"unknown byte[8]" => ['C', 'UInt8'], |
|
112
|
|
|
|
|
|
|
"unknown byte[9]" => ['C', 'UInt8'], |
|
113
|
|
|
|
|
|
|
"dependent" => ['C', 'UInt8'], |
|
114
|
|
|
|
|
|
|
"ionization" => ['C', 'UInt8'], |
|
115
|
|
|
|
|
|
|
"unknown byte[12]" => ['C', 'UInt8'], |
|
116
|
|
|
|
|
|
|
"unknown byte[13]" => ['C', 'UInt8'], |
|
117
|
|
|
|
|
|
|
"unknown byte[14]" => ['C', 'UInt8'], |
|
118
|
|
|
|
|
|
|
"unknown byte[15]" => ['C', 'UInt8'], |
|
119
|
|
|
|
|
|
|
"unknown byte[16]" => ['C', 'UInt8'], |
|
120
|
|
|
|
|
|
|
"unknown byte[17]" => ['C', 'UInt8'], |
|
121
|
|
|
|
|
|
|
"unknown byte[18]" => ['C', 'UInt8'], |
|
122
|
|
|
|
|
|
|
"unknown byte[19]" => ['C', 'UInt8'], |
|
123
|
|
|
|
|
|
|
"unknown byte[20]" => ['C', 'UInt8'], |
|
124
|
|
|
|
|
|
|
"unknown byte[21]" => ['C', 'UInt8'], |
|
125
|
|
|
|
|
|
|
"unknown byte[22]" => ['C', 'UInt8'], |
|
126
|
|
|
|
|
|
|
"unknown byte[23]" => ['C', 'UInt8'], |
|
127
|
|
|
|
|
|
|
"unknown byte[24]" => ['C', 'UInt8'], |
|
128
|
|
|
|
|
|
|
"unknown byte[25]" => ['C', 'UInt8'], |
|
129
|
|
|
|
|
|
|
"unknown byte[26]" => ['C', 'UInt8'], |
|
130
|
|
|
|
|
|
|
"unknown byte[27]" => ['C', 'UInt8'], |
|
131
|
|
|
|
|
|
|
"unknown byte[28]" => ['C', 'UInt8'], |
|
132
|
|
|
|
|
|
|
"unknown byte[29]" => ['C', 'UInt8'], |
|
133
|
|
|
|
|
|
|
"unknown byte[30]" => ['C', 'UInt8'], |
|
134
|
|
|
|
|
|
|
"unknown byte[31]" => ['C', 'UInt8'], |
|
135
|
|
|
|
|
|
|
"wideband" => ['C', 'UInt8'], |
|
136
|
|
|
|
|
|
|
"unknown byte[33]" => ['C', 'UInt8'], |
|
137
|
|
|
|
|
|
|
"unknown byte[34]" => ['C', 'UInt8'], |
|
138
|
|
|
|
|
|
|
"unknown byte[35]" => ['C', 'UInt8'], |
|
139
|
|
|
|
|
|
|
"unknown byte[36]" => ['C', 'UInt8'], |
|
140
|
|
|
|
|
|
|
"unknown byte[37]" => ['C', 'UInt8'], |
|
141
|
|
|
|
|
|
|
"unknown byte[38]" => ['C', 'UInt8'], |
|
142
|
|
|
|
|
|
|
"unknown byte[39]" => ['C', 'UInt8'], |
|
143
|
|
|
|
|
|
|
"analyzer" => ['C', 'UInt8'], |
|
144
|
|
|
|
|
|
|
); |
|
145
|
|
|
|
|
|
|
|
|
146
|
|
|
|
|
|
|
my %specific_fields; |
|
147
|
|
|
|
|
|
|
$specific_fields{8} = []; |
|
148
|
|
|
|
|
|
|
$specific_fields{57} = [ |
|
149
|
|
|
|
|
|
|
"unknown byte[41]" => ['C', 'UInt8'], |
|
150
|
|
|
|
|
|
|
"unknown byte[42]" => ['C', 'UInt8'], |
|
151
|
|
|
|
|
|
|
"unknown byte[43]" => ['C', 'UInt8'], |
|
152
|
|
|
|
|
|
|
"unknown byte[44]" => ['C', 'UInt8'], |
|
153
|
|
|
|
|
|
|
"unknown byte[45]" => ['C', 'UInt8'], |
|
154
|
|
|
|
|
|
|
"unknown byte[46]" => ['C', 'UInt8'], |
|
155
|
|
|
|
|
|
|
"unknown byte[47]" => ['C', 'UInt8'], |
|
156
|
|
|
|
|
|
|
"unknown byte[48]" => ['C', 'UInt8'], |
|
157
|
|
|
|
|
|
|
"unknown byte[49]" => ['C', 'UInt8'], |
|
158
|
|
|
|
|
|
|
"unknown byte[50]" => ['C', 'UInt8'], |
|
159
|
|
|
|
|
|
|
"unknown byte[51]" => ['C', 'UInt8'], |
|
160
|
|
|
|
|
|
|
"unknown byte[52]" => ['C', 'UInt8'], |
|
161
|
|
|
|
|
|
|
"unknown byte[53]" => ['C', 'UInt8'], |
|
162
|
|
|
|
|
|
|
"unknown byte[54]" => ['C', 'UInt8'], |
|
163
|
|
|
|
|
|
|
"unknown byte[55]" => ['C', 'UInt8'], |
|
164
|
|
|
|
|
|
|
"unknown byte[56]" => ['C', 'UInt8'], |
|
165
|
|
|
|
|
|
|
"unknown byte[57]" => ['C', 'UInt8'], |
|
166
|
|
|
|
|
|
|
"unknown byte[58]" => ['C', 'UInt8'], |
|
167
|
|
|
|
|
|
|
"unknown byte[59]" => ['C', 'UInt8'], |
|
168
|
|
|
|
|
|
|
"unknown byte[60]" => ['C', 'UInt8'], |
|
169
|
|
|
|
|
|
|
"unknown byte[61]" => ['C', 'UInt8'], |
|
170
|
|
|
|
|
|
|
"unknown byte[62]" => ['C', 'UInt8'], |
|
171
|
|
|
|
|
|
|
"unknown byte[63]" => ['C', 'UInt8'], |
|
172
|
|
|
|
|
|
|
"unknown byte[64]" => ['C', 'UInt8'], |
|
173
|
|
|
|
|
|
|
"unknown byte[65]" => ['C', 'UInt8'], |
|
174
|
|
|
|
|
|
|
"unknown byte[66]" => ['C', 'UInt8'], |
|
175
|
|
|
|
|
|
|
"unknown byte[67]" => ['C', 'UInt8'], |
|
176
|
|
|
|
|
|
|
"unknown byte[68]" => ['C', 'UInt8'], |
|
177
|
|
|
|
|
|
|
"unknown byte[69]" => ['C', 'UInt8'], |
|
178
|
|
|
|
|
|
|
"unknown byte[70]" => ['C', 'UInt8'], |
|
179
|
|
|
|
|
|
|
"unknown byte[71]" => ['C', 'UInt8'], |
|
180
|
|
|
|
|
|
|
"unknown byte[72]" => ['C', 'UInt8'], |
|
181
|
|
|
|
|
|
|
"unknown byte[73]" => ['C', 'UInt8'], |
|
182
|
|
|
|
|
|
|
"unknown byte[74]" => ['C', 'UInt8'], |
|
183
|
|
|
|
|
|
|
"unknown byte[75]" => ['C', 'UInt8'], |
|
184
|
|
|
|
|
|
|
"unknown byte[76]" => ['C', 'UInt8'], |
|
185
|
|
|
|
|
|
|
"unknown byte[77]" => ['C', 'UInt8'], |
|
186
|
|
|
|
|
|
|
"unknown byte[78]" => ['C', 'UInt8'], |
|
187
|
|
|
|
|
|
|
"unknown byte[79]" => ['C', 'UInt8'], |
|
188
|
|
|
|
|
|
|
]; |
|
189
|
|
|
|
|
|
|
|
|
190
|
|
|
|
|
|
|
$specific_fields{60} = $specific_fields{57}; |
|
191
|
|
|
|
|
|
|
|
|
192
|
|
|
|
|
|
|
$specific_fields{62} = [ |
|
193
|
|
|
|
|
|
|
"unknown byte[41]" => ['C', 'UInt8'], |
|
194
|
|
|
|
|
|
|
"unknown byte[42]" => ['C', 'UInt8'], |
|
195
|
|
|
|
|
|
|
"unknown byte[43]" => ['C', 'UInt8'], |
|
196
|
|
|
|
|
|
|
"unknown byte[44]" => ['C', 'UInt8'], |
|
197
|
|
|
|
|
|
|
"unknown byte[45]" => ['C', 'UInt8'], |
|
198
|
|
|
|
|
|
|
"unknown byte[46]" => ['C', 'UInt8'], |
|
199
|
|
|
|
|
|
|
"unknown byte[47]" => ['C', 'UInt8'], |
|
200
|
|
|
|
|
|
|
"unknown byte[48]" => ['C', 'UInt8'], |
|
201
|
|
|
|
|
|
|
"unknown byte[49]" => ['C', 'UInt8'], |
|
202
|
|
|
|
|
|
|
"unknown byte[50]" => ['C', 'UInt8'], |
|
203
|
|
|
|
|
|
|
"unknown byte[51]" => ['C', 'UInt8'], |
|
204
|
|
|
|
|
|
|
"unknown byte[52]" => ['C', 'UInt8'], |
|
205
|
|
|
|
|
|
|
"unknown byte[53]" => ['C', 'UInt8'], |
|
206
|
|
|
|
|
|
|
"unknown byte[54]" => ['C', 'UInt8'], |
|
207
|
|
|
|
|
|
|
"unknown byte[55]" => ['C', 'UInt8'], |
|
208
|
|
|
|
|
|
|
"unknown byte[56]" => ['C', 'UInt8'], |
|
209
|
|
|
|
|
|
|
"unknown byte[57]" => ['C', 'UInt8'], |
|
210
|
|
|
|
|
|
|
"unknown byte[58]" => ['C', 'UInt8'], |
|
211
|
|
|
|
|
|
|
"unknown byte[59]" => ['C', 'UInt8'], |
|
212
|
|
|
|
|
|
|
"unknown byte[60]" => ['C', 'UInt8'], |
|
213
|
|
|
|
|
|
|
"unknown byte[61]" => ['C', 'UInt8'], |
|
214
|
|
|
|
|
|
|
"unknown byte[62]" => ['C', 'UInt8'], |
|
215
|
|
|
|
|
|
|
"unknown byte[63]" => ['C', 'UInt8'], |
|
216
|
|
|
|
|
|
|
"unknown byte[64]" => ['C', 'UInt8'], |
|
217
|
|
|
|
|
|
|
"unknown byte[65]" => ['C', 'UInt8'], |
|
218
|
|
|
|
|
|
|
"unknown byte[66]" => ['C', 'UInt8'], |
|
219
|
|
|
|
|
|
|
"unknown byte[67]" => ['C', 'UInt8'], |
|
220
|
|
|
|
|
|
|
"unknown byte[68]" => ['C', 'UInt8'], |
|
221
|
|
|
|
|
|
|
"unknown byte[69]" => ['C', 'UInt8'], |
|
222
|
|
|
|
|
|
|
"unknown byte[70]" => ['C', 'UInt8'], |
|
223
|
|
|
|
|
|
|
"unknown byte[71]" => ['C', 'UInt8'], |
|
224
|
|
|
|
|
|
|
"unknown byte[72]" => ['C', 'UInt8'], |
|
225
|
|
|
|
|
|
|
"unknown byte[73]" => ['C', 'UInt8'], |
|
226
|
|
|
|
|
|
|
"unknown byte[74]" => ['C', 'UInt8'], |
|
227
|
|
|
|
|
|
|
"unknown byte[75]" => ['C', 'UInt8'], |
|
228
|
|
|
|
|
|
|
"unknown byte[76]" => ['C', 'UInt8'], |
|
229
|
|
|
|
|
|
|
"unknown byte[77]" => ['C', 'UInt8'], |
|
230
|
|
|
|
|
|
|
"unknown byte[78]" => ['C', 'UInt8'], |
|
231
|
|
|
|
|
|
|
"unknown byte[79]" => ['C', 'UInt8'], |
|
232
|
|
|
|
|
|
|
|
|
233
|
|
|
|
|
|
|
"unknown byte[80]" => ['C', 'UInt8'], |
|
234
|
|
|
|
|
|
|
"unknown byte[81]" => ['C', 'UInt8'], |
|
235
|
|
|
|
|
|
|
"unknown byte[82]" => ['C', 'UInt8'], |
|
236
|
|
|
|
|
|
|
"unknown byte[83]" => ['C', 'UInt8'], |
|
237
|
|
|
|
|
|
|
"unknown byte[84]" => ['C', 'UInt8'], |
|
238
|
|
|
|
|
|
|
"unknown byte[85]" => ['C', 'UInt8'], |
|
239
|
|
|
|
|
|
|
"unknown byte[86]" => ['C', 'UInt8'], |
|
240
|
|
|
|
|
|
|
"unknown byte[87]" => ['C', 'UInt8'], |
|
241
|
|
|
|
|
|
|
"unknown byte[88]" => ['C', 'UInt8'], |
|
242
|
|
|
|
|
|
|
"unknown byte[89]" => ['C', 'UInt8'], |
|
243
|
|
|
|
|
|
|
"unknown byte[90]" => ['C', 'UInt8'], |
|
244
|
|
|
|
|
|
|
"unknown byte[91]" => ['C', 'UInt8'], |
|
245
|
|
|
|
|
|
|
"unknown byte[92]" => ['C', 'UInt8'], |
|
246
|
|
|
|
|
|
|
"unknown byte[93]" => ['C', 'UInt8'], |
|
247
|
|
|
|
|
|
|
"unknown byte[94]" => ['C', 'UInt8'], |
|
248
|
|
|
|
|
|
|
"unknown byte[95]" => ['C', 'UInt8'], |
|
249
|
|
|
|
|
|
|
"unknown byte[96]" => ['C', 'UInt8'], |
|
250
|
|
|
|
|
|
|
"unknown byte[97]" => ['C', 'UInt8'], |
|
251
|
|
|
|
|
|
|
"unknown byte[98]" => ['C', 'UInt8'], |
|
252
|
|
|
|
|
|
|
"unknown byte[99]" => ['C', 'UInt8'], |
|
253
|
|
|
|
|
|
|
"unknown byte[100]" => ['C', 'UInt8'], |
|
254
|
|
|
|
|
|
|
"unknown byte[101]" => ['C', 'UInt8'], |
|
255
|
|
|
|
|
|
|
"unknown byte[102]" => ['C', 'UInt8'], |
|
256
|
|
|
|
|
|
|
"unknown byte[103]" => ['C', 'UInt8'], |
|
257
|
|
|
|
|
|
|
"unknown byte[104]" => ['C', 'UInt8'], |
|
258
|
|
|
|
|
|
|
"unknown byte[105]" => ['C', 'UInt8'], |
|
259
|
|
|
|
|
|
|
"unknown byte[106]" => ['C', 'UInt8'], |
|
260
|
|
|
|
|
|
|
"unknown byte[107]" => ['C', 'UInt8'], |
|
261
|
|
|
|
|
|
|
"unknown byte[108]" => ['C', 'UInt8'], |
|
262
|
|
|
|
|
|
|
"unknown byte[109]" => ['C', 'UInt8'], |
|
263
|
|
|
|
|
|
|
"unknown byte[110]" => ['C', 'UInt8'], |
|
264
|
|
|
|
|
|
|
"unknown byte[111]" => ['C', 'UInt8'], |
|
265
|
|
|
|
|
|
|
"unknown byte[112]" => ['C', 'UInt8'], |
|
266
|
|
|
|
|
|
|
"unknown byte[113]" => ['C', 'UInt8'], |
|
267
|
|
|
|
|
|
|
"unknown byte[114]" => ['C', 'UInt8'], |
|
268
|
|
|
|
|
|
|
"unknown byte[115]" => ['C', 'UInt8'], |
|
269
|
|
|
|
|
|
|
"unknown byte[116]" => ['C', 'UInt8'], |
|
270
|
|
|
|
|
|
|
"unknown byte[117]" => ['C', 'UInt8'], |
|
271
|
|
|
|
|
|
|
"unknown byte[118]" => ['C', 'UInt8'], |
|
272
|
|
|
|
|
|
|
"unknown byte[119]" => ['C', 'UInt8'], |
|
273
|
|
|
|
|
|
|
]; |
|
274
|
|
|
|
|
|
|
|
|
275
|
|
|
|
|
|
|
$specific_fields{63} = [ |
|
276
|
|
|
|
|
|
|
"unknown byte[41]" => ['C', 'UInt8'], |
|
277
|
|
|
|
|
|
|
"unknown byte[42]" => ['C', 'UInt8'], |
|
278
|
|
|
|
|
|
|
"unknown byte[43]" => ['C', 'UInt8'], |
|
279
|
|
|
|
|
|
|
"unknown byte[44]" => ['C', 'UInt8'], |
|
280
|
|
|
|
|
|
|
"unknown byte[45]" => ['C', 'UInt8'], |
|
281
|
|
|
|
|
|
|
"unknown byte[46]" => ['C', 'UInt8'], |
|
282
|
|
|
|
|
|
|
"unknown byte[47]" => ['C', 'UInt8'], |
|
283
|
|
|
|
|
|
|
"unknown byte[48]" => ['C', 'UInt8'], |
|
284
|
|
|
|
|
|
|
"unknown byte[49]" => ['C', 'UInt8'], |
|
285
|
|
|
|
|
|
|
"unknown byte[50]" => ['C', 'UInt8'], |
|
286
|
|
|
|
|
|
|
"unknown byte[51]" => ['C', 'UInt8'], |
|
287
|
|
|
|
|
|
|
"unknown byte[52]" => ['C', 'UInt8'], |
|
288
|
|
|
|
|
|
|
"unknown byte[53]" => ['C', 'UInt8'], |
|
289
|
|
|
|
|
|
|
"unknown byte[54]" => ['C', 'UInt8'], |
|
290
|
|
|
|
|
|
|
"unknown byte[55]" => ['C', 'UInt8'], |
|
291
|
|
|
|
|
|
|
"unknown byte[56]" => ['C', 'UInt8'], |
|
292
|
|
|
|
|
|
|
"unknown byte[57]" => ['C', 'UInt8'], |
|
293
|
|
|
|
|
|
|
"unknown byte[58]" => ['C', 'UInt8'], |
|
294
|
|
|
|
|
|
|
"unknown byte[59]" => ['C', 'UInt8'], |
|
295
|
|
|
|
|
|
|
"unknown byte[60]" => ['C', 'UInt8'], |
|
296
|
|
|
|
|
|
|
"unknown byte[61]" => ['C', 'UInt8'], |
|
297
|
|
|
|
|
|
|
"unknown byte[62]" => ['C', 'UInt8'], |
|
298
|
|
|
|
|
|
|
"unknown byte[63]" => ['C', 'UInt8'], |
|
299
|
|
|
|
|
|
|
"unknown byte[64]" => ['C', 'UInt8'], |
|
300
|
|
|
|
|
|
|
"unknown byte[65]" => ['C', 'UInt8'], |
|
301
|
|
|
|
|
|
|
"unknown byte[66]" => ['C', 'UInt8'], |
|
302
|
|
|
|
|
|
|
"unknown byte[67]" => ['C', 'UInt8'], |
|
303
|
|
|
|
|
|
|
"unknown byte[68]" => ['C', 'UInt8'], |
|
304
|
|
|
|
|
|
|
"unknown byte[69]" => ['C', 'UInt8'], |
|
305
|
|
|
|
|
|
|
"unknown byte[70]" => ['C', 'UInt8'], |
|
306
|
|
|
|
|
|
|
"unknown byte[71]" => ['C', 'UInt8'], |
|
307
|
|
|
|
|
|
|
"unknown byte[72]" => ['C', 'UInt8'], |
|
308
|
|
|
|
|
|
|
"unknown byte[73]" => ['C', 'UInt8'], |
|
309
|
|
|
|
|
|
|
"unknown byte[74]" => ['C', 'UInt8'], |
|
310
|
|
|
|
|
|
|
"unknown byte[75]" => ['C', 'UInt8'], |
|
311
|
|
|
|
|
|
|
"unknown byte[76]" => ['C', 'UInt8'], |
|
312
|
|
|
|
|
|
|
"unknown byte[77]" => ['C', 'UInt8'], |
|
313
|
|
|
|
|
|
|
"unknown byte[78]" => ['C', 'UInt8'], |
|
314
|
|
|
|
|
|
|
"unknown byte[79]" => ['C', 'UInt8'], |
|
315
|
|
|
|
|
|
|
|
|
316
|
|
|
|
|
|
|
"unknown byte[80]" => ['C', 'UInt8'], |
|
317
|
|
|
|
|
|
|
"unknown byte[81]" => ['C', 'UInt8'], |
|
318
|
|
|
|
|
|
|
"unknown byte[82]" => ['C', 'UInt8'], |
|
319
|
|
|
|
|
|
|
"unknown byte[83]" => ['C', 'UInt8'], |
|
320
|
|
|
|
|
|
|
"unknown byte[84]" => ['C', 'UInt8'], |
|
321
|
|
|
|
|
|
|
"unknown byte[85]" => ['C', 'UInt8'], |
|
322
|
|
|
|
|
|
|
"unknown byte[86]" => ['C', 'UInt8'], |
|
323
|
|
|
|
|
|
|
"unknown byte[87]" => ['C', 'UInt8'], |
|
324
|
|
|
|
|
|
|
"unknown byte[88]" => ['C', 'UInt8'], |
|
325
|
|
|
|
|
|
|
"unknown byte[89]" => ['C', 'UInt8'], |
|
326
|
|
|
|
|
|
|
"unknown byte[90]" => ['C', 'UInt8'], |
|
327
|
|
|
|
|
|
|
"unknown byte[91]" => ['C', 'UInt8'], |
|
328
|
|
|
|
|
|
|
"unknown byte[92]" => ['C', 'UInt8'], |
|
329
|
|
|
|
|
|
|
"unknown byte[93]" => ['C', 'UInt8'], |
|
330
|
|
|
|
|
|
|
"unknown byte[94]" => ['C', 'UInt8'], |
|
331
|
|
|
|
|
|
|
"unknown byte[95]" => ['C', 'UInt8'], |
|
332
|
|
|
|
|
|
|
"unknown byte[96]" => ['C', 'UInt8'], |
|
333
|
|
|
|
|
|
|
"unknown byte[97]" => ['C', 'UInt8'], |
|
334
|
|
|
|
|
|
|
"unknown byte[98]" => ['C', 'UInt8'], |
|
335
|
|
|
|
|
|
|
"unknown byte[99]" => ['C', 'UInt8'], |
|
336
|
|
|
|
|
|
|
"unknown byte[100]" => ['C', 'UInt8'], |
|
337
|
|
|
|
|
|
|
"unknown byte[101]" => ['C', 'UInt8'], |
|
338
|
|
|
|
|
|
|
"unknown byte[102]" => ['C', 'UInt8'], |
|
339
|
|
|
|
|
|
|
"unknown byte[103]" => ['C', 'UInt8'], |
|
340
|
|
|
|
|
|
|
"unknown byte[104]" => ['C', 'UInt8'], |
|
341
|
|
|
|
|
|
|
"unknown byte[105]" => ['C', 'UInt8'], |
|
342
|
|
|
|
|
|
|
"unknown byte[106]" => ['C', 'UInt8'], |
|
343
|
|
|
|
|
|
|
"unknown byte[107]" => ['C', 'UInt8'], |
|
344
|
|
|
|
|
|
|
"unknown byte[108]" => ['C', 'UInt8'], |
|
345
|
|
|
|
|
|
|
"unknown byte[109]" => ['C', 'UInt8'], |
|
346
|
|
|
|
|
|
|
"unknown byte[110]" => ['C', 'UInt8'], |
|
347
|
|
|
|
|
|
|
"unknown byte[111]" => ['C', 'UInt8'], |
|
348
|
|
|
|
|
|
|
"unknown byte[112]" => ['C', 'UInt8'], |
|
349
|
|
|
|
|
|
|
"unknown byte[113]" => ['C', 'UInt8'], |
|
350
|
|
|
|
|
|
|
"unknown byte[114]" => ['C', 'UInt8'], |
|
351
|
|
|
|
|
|
|
"unknown byte[115]" => ['C', 'UInt8'], |
|
352
|
|
|
|
|
|
|
"unknown byte[116]" => ['C', 'UInt8'], |
|
353
|
|
|
|
|
|
|
"unknown byte[117]" => ['C', 'UInt8'], |
|
354
|
|
|
|
|
|
|
"unknown byte[118]" => ['C', 'UInt8'], |
|
355
|
|
|
|
|
|
|
"unknown byte[119]" => ['C', 'UInt8'], |
|
356
|
|
|
|
|
|
|
|
|
357
|
|
|
|
|
|
|
"unknown byte[120]" => ['C', 'UInt8'], |
|
358
|
|
|
|
|
|
|
"unknown byte[121]" => ['C', 'UInt8'], |
|
359
|
|
|
|
|
|
|
"unknown byte[122]" => ['C', 'UInt8'], |
|
360
|
|
|
|
|
|
|
"unknown byte[123]" => ['C', 'UInt8'], |
|
361
|
|
|
|
|
|
|
"unknown byte[124]" => ['C', 'UInt8'], |
|
362
|
|
|
|
|
|
|
"unknown byte[125]" => ['C', 'UInt8'], |
|
363
|
|
|
|
|
|
|
"unknown byte[126]" => ['C', 'UInt8'], |
|
364
|
|
|
|
|
|
|
"unknown byte[127]" => ['C', 'UInt8'], |
|
365
|
|
|
|
|
|
|
]; |
|
366
|
|
|
|
|
|
|
|
|
367
|
|
|
|
|
|
|
$specific_fields{64} = $specific_fields{63}; |
|
368
|
|
|
|
|
|
|
|
|
369
|
|
|
|
|
|
|
# stringify symbols |
|
370
|
|
|
|
|
|
|
my %polarity_symbol = ( |
|
371
|
|
|
|
|
|
|
0 => "-", |
|
372
|
|
|
|
|
|
|
1 => "+", |
|
373
|
|
|
|
|
|
|
2 => "any", |
|
374
|
|
|
|
|
|
|
); |
|
375
|
|
|
|
|
|
|
|
|
376
|
|
|
|
|
|
|
my %scan_mode_symbol = ( |
|
377
|
|
|
|
|
|
|
0 => "c", |
|
378
|
|
|
|
|
|
|
1 => "p", |
|
379
|
|
|
|
|
|
|
2 => "?", |
|
380
|
|
|
|
|
|
|
); |
|
381
|
|
|
|
|
|
|
|
|
382
|
|
|
|
|
|
|
my %dependent_symbol = ( |
|
383
|
|
|
|
|
|
|
0 => "", |
|
384
|
|
|
|
|
|
|
1 => " d", |
|
385
|
|
|
|
|
|
|
); |
|
386
|
|
|
|
|
|
|
|
|
387
|
|
|
|
|
|
|
my %wideband_symbol = ( |
|
388
|
|
|
|
|
|
|
0 => "", |
|
389
|
|
|
|
|
|
|
1 => " w", |
|
390
|
|
|
|
|
|
|
2 => "", |
|
391
|
|
|
|
|
|
|
); |
|
392
|
|
|
|
|
|
|
|
|
393
|
|
|
|
|
|
|
my %ms_power_symbol = ( |
|
394
|
|
|
|
|
|
|
0 => "?", |
|
395
|
|
|
|
|
|
|
1 => "ms", |
|
396
|
|
|
|
|
|
|
2 => "ms2", |
|
397
|
|
|
|
|
|
|
3 => "ms3", |
|
398
|
|
|
|
|
|
|
4 => "ms4", |
|
399
|
|
|
|
|
|
|
5 => "ms5", |
|
400
|
|
|
|
|
|
|
6 => "ms6", |
|
401
|
|
|
|
|
|
|
7 => "ms7", |
|
402
|
|
|
|
|
|
|
8 => "ms8", |
|
403
|
|
|
|
|
|
|
); |
|
404
|
|
|
|
|
|
|
|
|
405
|
|
|
|
|
|
|
# used in list() |
|
406
|
|
|
|
|
|
|
my %name = ( |
|
407
|
|
|
|
|
|
|
2 => "corona", |
|
408
|
|
|
|
|
|
|
3 => "detector", |
|
409
|
|
|
|
|
|
|
4 => "polarity", |
|
410
|
|
|
|
|
|
|
5 => "scan mode", |
|
411
|
|
|
|
|
|
|
6 => "ms power", |
|
412
|
|
|
|
|
|
|
7 => "scan type", |
|
413
|
|
|
|
|
|
|
|
|
414
|
|
|
|
|
|
|
10 => "dependent", |
|
415
|
|
|
|
|
|
|
11 => "ionization", |
|
416
|
|
|
|
|
|
|
|
|
417
|
|
|
|
|
|
|
32 => "wideband", |
|
418
|
|
|
|
|
|
|
40 => "analyzer", |
|
419
|
|
|
|
|
|
|
); |
|
420
|
|
|
|
|
|
|
|
|
421
|
|
|
|
|
|
|
sub decode { |
|
422
|
|
|
|
|
|
|
# my ($class, $stream, $version) = @_; |
|
423
|
37
|
50
|
|
37
|
1
|
110
|
die "don\'t know how to parse version $_[2]" unless $specific_fields{$_[2]}; |
|
424
|
37
|
|
|
|
|
81
|
return bless Finnigan::Decoder->read($_[1], [@common_fields, @{$specific_fields{$_[2]}}]), $_[0]; |
|
|
37
|
|
|
|
|
979
|
|
|
425
|
|
|
|
|
|
|
} |
|
426
|
|
|
|
|
|
|
|
|
427
|
|
|
|
|
|
|
|
|
428
|
|
|
|
|
|
|
sub list { |
|
429
|
5
|
|
|
5
|
1
|
11
|
my @list; |
|
430
|
5
|
|
|
|
|
10
|
foreach my $i (0 .. keys(%{$_[0]->{data}}) - 1) { |
|
|
5
|
|
|
|
|
23
|
|
|
431
|
640
|
100
|
|
|
|
1390
|
my $key = $name{$i} ? $name{$i} : "unknown byte[$i]"; |
|
432
|
640
|
|
|
|
|
607
|
my $value; |
|
433
|
640
|
100
|
|
|
|
1038
|
if ( $_[1] ) { # decode |
|
434
|
512
|
100
|
|
|
|
1439
|
$value = $TYPE{$key} |
|
435
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
436
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
437
|
|
|
|
|
|
|
} |
|
438
|
|
|
|
|
|
|
else { |
|
439
|
128
|
|
|
|
|
286
|
$value = $_[0]->{data}->{$key}->{value}; |
|
440
|
|
|
|
|
|
|
} |
|
441
|
640
|
|
|
|
|
953
|
$list[$i] = $value; |
|
442
|
|
|
|
|
|
|
} |
|
443
|
5
|
|
|
|
|
262
|
return @list; |
|
444
|
|
|
|
|
|
|
} |
|
445
|
|
|
|
|
|
|
|
|
446
|
|
|
|
|
|
|
sub corona { |
|
447
|
3
|
|
|
3
|
1
|
7
|
my $key = "corona"; |
|
448
|
3
|
50
|
|
|
|
15
|
if ( $_[1] ) { # decode |
|
449
|
3
|
50
|
|
|
|
35
|
return $TYPE{$key} |
|
450
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
451
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
452
|
|
|
|
|
|
|
} |
|
453
|
|
|
|
|
|
|
else { |
|
454
|
0
|
|
|
|
|
0
|
shift->{data}->{corona}->{value}; |
|
455
|
|
|
|
|
|
|
} |
|
456
|
|
|
|
|
|
|
} |
|
457
|
|
|
|
|
|
|
|
|
458
|
|
|
|
|
|
|
sub detector { |
|
459
|
1
|
|
|
1
|
1
|
4
|
my $key = "detector"; |
|
460
|
1
|
50
|
|
|
|
13
|
if ( $_[1] ) { |
|
461
|
1
|
50
|
|
|
|
20
|
return $TYPE{$key} |
|
462
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
463
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
464
|
|
|
|
|
|
|
} |
|
465
|
|
|
|
|
|
|
else { |
|
466
|
0
|
|
|
|
|
0
|
$_[0]->{data}->{$key}->{value}; |
|
467
|
|
|
|
|
|
|
} |
|
468
|
|
|
|
|
|
|
} |
|
469
|
|
|
|
|
|
|
|
|
470
|
|
|
|
|
|
|
sub polarity { |
|
471
|
9
|
|
|
9
|
1
|
42
|
my $key = "polarity"; |
|
472
|
9
|
100
|
|
|
|
27
|
if ( $_[1] ) { # decode |
|
473
|
3
|
50
|
|
|
|
34
|
return $TYPE{$key} |
|
474
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
475
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
476
|
|
|
|
|
|
|
} |
|
477
|
|
|
|
|
|
|
else { |
|
478
|
6
|
|
|
|
|
40
|
return $_[0]->{data}->{$key}->{value}; |
|
479
|
|
|
|
|
|
|
} |
|
480
|
|
|
|
|
|
|
} |
|
481
|
|
|
|
|
|
|
|
|
482
|
|
|
|
|
|
|
sub scan_mode { |
|
483
|
9
|
|
|
9
|
1
|
16
|
my $key = "scan mode"; |
|
484
|
9
|
100
|
|
|
|
19
|
if ( $_[1] ) { |
|
485
|
3
|
50
|
|
|
|
30
|
return $TYPE{$key} |
|
486
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
487
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
488
|
|
|
|
|
|
|
} |
|
489
|
|
|
|
|
|
|
else { |
|
490
|
6
|
|
|
|
|
36
|
$_[0]->{data}->{$key}->{value}; |
|
491
|
|
|
|
|
|
|
} |
|
492
|
|
|
|
|
|
|
} |
|
493
|
|
|
|
|
|
|
|
|
494
|
|
|
|
|
|
|
sub ms_power { |
|
495
|
9
|
|
|
9
|
1
|
17
|
my $key = "ms power"; |
|
496
|
9
|
100
|
|
|
|
27
|
if ( $_[1] ) { |
|
497
|
3
|
50
|
|
|
|
27
|
return $TYPE{$key} |
|
498
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
499
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
500
|
|
|
|
|
|
|
} |
|
501
|
|
|
|
|
|
|
else { |
|
502
|
6
|
|
|
|
|
47
|
$_[0]->{data}->{$key}->{value}; |
|
503
|
|
|
|
|
|
|
} |
|
504
|
|
|
|
|
|
|
} |
|
505
|
|
|
|
|
|
|
|
|
506
|
|
|
|
|
|
|
sub scan_type { |
|
507
|
9
|
|
|
9
|
1
|
18
|
my $key = "scan type"; |
|
508
|
9
|
50
|
|
|
|
22
|
if ( $_[1] ) { |
|
509
|
9
|
50
|
|
|
|
66
|
return $TYPE{$key} |
|
510
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
511
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
512
|
|
|
|
|
|
|
} |
|
513
|
|
|
|
|
|
|
else { |
|
514
|
0
|
|
|
|
|
0
|
$_[0]->{data}->{$key}->{value}; |
|
515
|
|
|
|
|
|
|
} |
|
516
|
|
|
|
|
|
|
} |
|
517
|
|
|
|
|
|
|
|
|
518
|
|
|
|
|
|
|
sub dependent { |
|
519
|
9
|
|
|
9
|
1
|
61
|
$_[0]->{data}->{dependent}->{value}; |
|
520
|
|
|
|
|
|
|
} |
|
521
|
|
|
|
|
|
|
|
|
522
|
|
|
|
|
|
|
sub ionization { |
|
523
|
9
|
|
|
9
|
1
|
17
|
my $key = "ionization"; |
|
524
|
9
|
50
|
|
|
|
21
|
if ( $_[1] ) { |
|
525
|
9
|
50
|
|
|
|
70
|
return $TYPE{$key} |
|
526
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
527
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
528
|
|
|
|
|
|
|
} |
|
529
|
|
|
|
|
|
|
else { |
|
530
|
0
|
|
|
|
|
0
|
$_[0]->{data}->{$key}->{value}; |
|
531
|
|
|
|
|
|
|
} |
|
532
|
|
|
|
|
|
|
} |
|
533
|
|
|
|
|
|
|
|
|
534
|
|
|
|
|
|
|
sub wideband { |
|
535
|
8
|
|
|
8
|
1
|
12
|
my $key = "wideband"; |
|
536
|
8
|
100
|
|
|
|
17
|
if ( $_[1] ) { |
|
537
|
2
|
50
|
|
|
|
21
|
return $TYPE{$key} |
|
538
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
539
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
540
|
|
|
|
|
|
|
} |
|
541
|
|
|
|
|
|
|
else { |
|
542
|
6
|
|
|
|
|
36
|
$_[0]->{data}->{$key}->{value}; |
|
543
|
|
|
|
|
|
|
} |
|
544
|
|
|
|
|
|
|
} |
|
545
|
|
|
|
|
|
|
|
|
546
|
|
|
|
|
|
|
sub analyzer { |
|
547
|
9
|
|
|
9
|
1
|
15
|
my $key = "analyzer"; |
|
548
|
9
|
50
|
|
|
|
30
|
if ( $_[1] ) { |
|
549
|
9
|
50
|
|
|
|
73
|
return $TYPE{$key} |
|
550
|
|
|
|
|
|
|
? $SYMBOL{$TYPE{$key}}->{$_[0]->{data}->{$key}->{value}} |
|
551
|
|
|
|
|
|
|
: $_[0]->{data}->{$key}->{value}; |
|
552
|
|
|
|
|
|
|
} |
|
553
|
|
|
|
|
|
|
else { |
|
554
|
0
|
|
|
|
|
0
|
$_[0]->{data}->{$key}->{value}; |
|
555
|
|
|
|
|
|
|
} |
|
556
|
|
|
|
|
|
|
} |
|
557
|
|
|
|
|
|
|
|
|
558
|
|
|
|
|
|
|
sub stringify { |
|
559
|
6
|
|
|
6
|
1
|
15
|
my $self = shift; |
|
560
|
|
|
|
|
|
|
|
|
561
|
|
|
|
|
|
|
# consider adding {s;e} and "lock" to output, e.g.: |
|
562
|
|
|
|
|
|
|
# FTMS {1;1} + p ESI Full lock ms [60.00-1200.00]" |
|
563
|
6
|
|
|
|
|
20
|
$self->analyzer(decode => 1) |
|
564
|
|
|
|
|
|
|
. " " . $polarity_symbol{$self->polarity} |
|
565
|
|
|
|
|
|
|
. " " . $scan_mode_symbol{$self->scan_mode} |
|
566
|
|
|
|
|
|
|
. " " . $self->ionization('decode') |
|
567
|
|
|
|
|
|
|
. $dependent_symbol{$self->dependent} |
|
568
|
|
|
|
|
|
|
. $wideband_symbol{$self->wideband} |
|
569
|
|
|
|
|
|
|
. " " . $self->scan_type('decode') |
|
570
|
|
|
|
|
|
|
. " " . $ms_power_symbol{$self->ms_power} |
|
571
|
|
|
|
|
|
|
} |
|
572
|
|
|
|
|
|
|
|
|
573
|
|
|
|
|
|
|
1; |
|
574
|
|
|
|
|
|
|
__END__ |