File Coverage

Bio/Prospect/Init.pm
Criterion Covered Total %
statement 9 9 100.0
branch n/a
condition n/a
subroutine 3 3 100.0
pod n/a
total 12 12 100.0


line stmt bran cond sub pod time code
1             =head1 NAME
2              
3             Bio::Prospect::Init -- initialization parameters for Bio::Prospect::
4             $Id: Init.pm,v 1.11 2003/11/18 21:04:19 rkh Exp $
5              
6             =head1 SYNOPSIS
7              
8             =head1 DESCRIPTION
9              
10             B<Bio::Prospect::Init> contains initialization parameters for the entire
11             Bio::Prospect:: package.
12              
13             =head1 ROUTINES & METHODS
14              
15             =cut
16              
17              
18             package Bio::Prospect::Init;
19              
20 2     2   1067 use warnings;
  2         4  
  2         68  
21 2     2   12 use strict;
  2         3  
  2         71  
22              
23 2     2   10 use vars qw( $VERSION );
  2         7  
  2         1001  
24             $VERSION = sprintf( "%d.%02d", q$Revision: 1.11 $ =~ /(\d+)\.(\d+)/ );
25              
26              
27             # PROSPECT_PATH - location of prospect installation, used by LocalClient
28             $Bio::Prospect::Init::PROSPECT_PATH = '/apps/compbio/i686-linux-2.4/opt/prospect';
29              
30             # PDB_PATH - location of pdb files, used by LocalClient
31             $Bio::Prospect::Init::PDB_PATH = '/apps/compbio/share/pdb';
32              
33             # PROCESSED_PDB_PATH - location of processed pdb files for use with
34             # the output_rasmol_script of the Thread class
35             $Bio::Prospect::Init::PROCESSED_PDB_PATH = '/apps/compbio/share/prospect/pdb';
36              
37             # MVIEW_APP - path to mview application, used by Align
38             $Bio::Prospect::Init::MVIEW_APP = '';
39              
40             # SOAP_SERVER_HOST, SOAP_SERVER_PORT - host and port for SOAP::Transport::HTTP
41             # object that dispatches to a SoapServer object. See bin/startProspectSoapServer.pl
42             # for more information.
43             $Bio::Prospect::Init::SOAP_SERVER_HOST = "host";
44             $Bio::Prospect::Init::SOAP_SERVER_PORT = '8081';
45              
46             # PING_FAILURE_EMAILME = email the following list of people if the pingProspectSoapServer
47             # script fails to reach SoapServer
48             @Bio::Prospect::Init::PING_FAILURE_EMAILME = q( you );
49              
50             # PING_FAILURE_NOTIFY_FILE = semaphore for pingProspectSoapServer script. If ping fails,
51             # email is sent to PING_FAILURE_EMAILME list above and then this file is created so
52             # that additional runs of pingProspectSoapServer will not send mail again
53             $Bio::Prospect::Init::PING_FAILURE_SEMPAHORE = '/tmp/prospect_sempahore';
54              
55             1;