|  line  | 
 stmt  | 
 bran  | 
 cond  | 
 sub  | 
 pod  | 
 time  | 
 code  | 
| 
1
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 package Bio::Phylo::Matrices::Datatype::Standard;  | 
| 
2
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13
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 | 
  
13
  
 | 
 
 | 
90
 | 
 use strict;  | 
| 
 
 | 
13
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 | 
47
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    | 
| 
 
 | 
13
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 | 
409
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    | 
| 
3
 | 
13
 | 
 
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 | 
  
13
  
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 | 
70
 | 
 use base 'Bio::Phylo::Matrices::Datatype';  | 
| 
 
 | 
13
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28
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    | 
| 
 
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13
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2294
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    | 
| 
4
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 our ( $LOOKUP, $MISSING, $GAP );  | 
| 
5
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    | 
| 
6
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 =head1 NAME  | 
| 
7
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    | 
| 
8
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
 Bio::Phylo::Matrices::Datatype::Standard - Validator subclass,  | 
| 
9
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 | 
 no serviceable parts inside  | 
| 
10
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    | 
| 
11
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 =head1 DESCRIPTION  | 
| 
12
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    | 
| 
13
 | 
 
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 The Bio::Phylo::Matrices::Datatype::* classes are used to validate data  | 
| 
14
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 contained by L and L  | 
| 
15
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 objects.  | 
| 
16
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    | 
| 
17
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 =cut  | 
| 
18
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    | 
| 
19
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 # podinherit_insert_token  | 
| 
20
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    | 
| 
21
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 =head1 SEE ALSO  | 
| 
22
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    | 
| 
23
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 | 
 There is a mailing list at L   | 
| 
24
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 for any user or developer questions and discussions.  | 
| 
25
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    | 
| 
26
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 =over  | 
| 
27
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    | 
| 
28
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 =item L  | 
| 
29
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    | 
| 
30
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 | 
 This class subclasses L.  | 
| 
31
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    | 
| 
32
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 | 
 =item L  | 
| 
33
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    | 
| 
34
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 | 
 Also see the manual: L and L.  | 
| 
35
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    | 
| 
36
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 =back  | 
| 
37
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    | 
| 
38
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 =head1 CITATION  | 
| 
39
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    | 
| 
40
 | 
 
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 | 
 If you use Bio::Phylo in published research, please cite it:  | 
| 
41
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    | 
| 
42
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 | 
 
 | 
 B, B, B, B  | 
| 
43
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 and B, 2011. Bio::Phylo - phyloinformatic analysis using Perl.  | 
| 
44
 | 
 
 | 
 
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 | 
 
 | 
 
 | 
 
 | 
 I B<12>:63.  | 
| 
45
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 L  | 
| 
46
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    | 
| 
47
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 =cut  | 
| 
48
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    | 
| 
49
 | 
 
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 | 
 $LOOKUP = {  | 
| 
50
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 | 
     '0' => ['0'],  | 
| 
51
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 | 
     '1' => ['1'],  | 
| 
52
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     '2' => ['2'],  | 
| 
53
 | 
 
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     '3' => ['3'],  | 
| 
54
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 | 
     '4' => ['4'],  | 
| 
55
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     '5' => ['5'],  | 
| 
56
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 | 
     '6' => ['6'],  | 
| 
57
 | 
 
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 | 
 
 | 
     '7' => ['7'],  | 
| 
58
 | 
 
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 | 
 
 | 
 
 | 
     '8' => ['8'],  | 
| 
59
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
     '9' => ['9'],  | 
| 
60
 | 
 
 | 
 
 | 
 
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 | 
 
 | 
 };  | 
| 
61
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 $MISSING = '?';  | 
| 
62
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 
 | 
 1;  |