File Coverage

blib/lib/Bio/MUST/Drivers.pm
Criterion Covered Total %
statement 30 30 100.0
branch n/a
condition n/a
subroutine 10 10 100.0
pod n/a
total 40 40 100.0


line stmt bran cond sub pod time code
1             package Bio::MUST::Drivers;
2             # ABSTRACT: Bio::MUST classes for driving external programs
3             # CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
4             # CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
5             # CONTRIBUTOR: Loic MEUNIER <loic.meunier@doct.uliege.be>
6             $Bio::MUST::Drivers::VERSION = '0.191910';
7 5     5   25082403 use strict;
  5         57  
  5         183  
8 5     5   30 use warnings;
  5         11  
  5         172  
9              
10 5     5   2121 use Bio::MUST::Drivers::Blast;
  5         22  
  5         247  
11 5     5   3356 use Bio::MUST::Drivers::Hmmer;
  5         20  
  5         243  
12 5     5   3124 use Bio::MUST::Drivers::Cap3;
  5         22  
  5         255  
13 5     5   2840 use Bio::MUST::Drivers::CdHit;
  5         21  
  5         263  
14 5     5   3044 use Bio::MUST::Drivers::Exonerate;
  5         23  
  5         265  
15 5     5   3709 use Bio::MUST::Drivers::Exonerate::Aligned;
  5         18  
  5         260  
16 5     5   3405 use Bio::MUST::Drivers::ClustalO;
  5         19  
  5         202  
17 5     5   2929 use Bio::MUST::Drivers::Mafft;
  5         17  
  5         276  
18              
19             1;
20              
21             __END__
22              
23             =pod
24              
25             =head1 NAME
26              
27             Bio::MUST::Drivers - Bio::MUST classes for driving external programs
28              
29             =head1 VERSION
30              
31             version 0.191910
32              
33             =head1 SYNOPSIS
34              
35             # TODO
36              
37             =head1 DESCRIPTION
38              
39             External dependencies are installed automatically at first use if the C<brew>
40             executable is available in the C<$PATH>. Alternatively, dependencies can be
41             installed (either using C<apt-get>, C<brew> or manually) by the user prior or
42             after installing the distribution itself. C<brew> is the main command of the I<Homebrew> package manager L<https://brew.sh/>.
43              
44             Note that any test requiring a missing dependency is skipped when testing.
45              
46             =head1 AUTHOR
47              
48             Denis BAURAIN <denis.baurain@uliege.be>
49              
50             =head1 CONTRIBUTORS
51              
52             =for stopwords Arnaud DI FRANCO Amandine BERTRAND Loic MEUNIER
53              
54             =over 4
55              
56             =item *
57              
58             Arnaud DI FRANCO <arnaud.difranco@gmail.com>
59              
60             =item *
61              
62             Amandine BERTRAND <amandine.bertrand@doct.uliege.be>
63              
64             =item *
65              
66             Loic MEUNIER <loic.meunier@doct.uliege.be>
67              
68             =back
69              
70             =head1 COPYRIGHT AND LICENSE
71              
72             This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
73              
74             This is free software; you can redistribute it and/or modify it under
75             the same terms as the Perl 5 programming language system itself.
76              
77             =cut