File Coverage

blib/lib/Bio/GMOD/Util/Rearrange.pm

Criterion	Covered	Total	%
statement	27	33	81.8
branch	6	12	50.0
condition	1	3	33.3
subroutine	3	3	100.0
pod	0	1	0.0
total	37	52	71.1

package Bio::GMOD::Util::Rearrange;


use strict;
require Exporter;
use vars qw(@ISA @EXPORT @EXPORT_OK);
@ISA = 'Exporter';
@EXPORT_OK = qw(rearrange);
@EXPORT = qw(rearrange);

# default export
sub rearrange {
    my($order,@param) = @_;
    return unless @param;
    my %param;

    if (ref $param[0] eq 'HASH') {
      %param = %{$param[0]};
    } else {
      # Named parameter must begin with hyphen
      return @param unless (defined($param[0]) && substr($param[0],0,1) eq '-');

      my $i;
      for ($i=0;$i<@param;$i+=2) {
        $param[$i]=~s/^\-//;     # get rid of initial - if present
        $param[$i]=~tr/a-z/A-Z/; # parameters are upper case
      }

      %param = @param;                # convert into associative array
    }

    my(@return_array);

    local($^W) = 0;
    my($key)='';
    foreach $key (@$order) {
        my($value);
        if (ref($key) eq 'ARRAY') {
            foreach (@$key) {
                last if defined($value);
                $value = $param{$_};
                delete $param{$_};
            }
        } else {
            $value = $param{$key};
            delete $param{$key};
        }
        push(@return_array,$value);
    }
    push (@return_array,{%param}) if %param;
    return @return_array;
}


__END__