File Coverage

blib/lib/Bio/FastParsers/Hmmer.pm
Criterion Covered Total %
statement 18 18 100.0
branch n/a
condition n/a
subroutine 6 6 100.0
pod n/a
total 24 24 100.0


line stmt bran cond sub pod time code
1             # ABSTRACT: Classes for parsing HMMER output
2             # CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
3             $Bio::FastParsers::Hmmer::VERSION = '0.221230';
4             use strict;
5 7     7   48 use warnings;
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6 7     7   42  
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7             use Bio::FastParsers::Hmmer::Model;
8 7     7   2662 use Bio::FastParsers::Hmmer::Standard;
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9 7     7   3495 use Bio::FastParsers::Hmmer::Table;
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10 7     7   4136 use Bio::FastParsers::Hmmer::DomTable;
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11 7     7   3621  
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12             1;
13              
14              
15             =pod
16              
17             =head1 NAME
18              
19             Bio::FastParsers::Hmmer - Classes for parsing HMMER output
20              
21             =head1 VERSION
22              
23             version 0.221230
24              
25             =head1 SYNOPSIS
26              
27             # see Bio::FastParsers::Hmmer::Model
28             # see Bio::FastParsers::Hmmer::Standard
29             # see Bio::FastParsers::Hmmer::Table;
30             # see Bio::FastParsers::Hmmer::DomTable;
31              
32             =head1 DESCRIPTION
33              
34             Parsers for the HMMER model and three output formats are available: standard,
35             tabular and domain-wise tabular.
36              
37             =head1 AUTHOR
38              
39             Denis BAURAIN <denis.baurain@uliege.be>
40              
41             =head1 CONTRIBUTOR
42              
43             =for stopwords Arnaud DI FRANCO
44              
45             Arnaud DI FRANCO <arnaud.difranco@gmail.com>
46              
47             =head1 COPYRIGHT AND LICENSE
48              
49             This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
50              
51             This is free software; you can redistribute it and/or modify it under
52             the same terms as the Perl 5 programming language system itself.
53              
54             =cut