File Coverage

blib/lib/Bio/FastParsers/Hmmer.pm
Criterion Covered Total %
statement 18 18 100.0
branch n/a
condition n/a
subroutine 6 6 100.0
pod n/a
total 24 24 100.0


line stmt bran cond sub pod time code
1             package Bio::FastParsers::Hmmer;
2             # ABSTRACT: Classes for parsing HMMER output
3             # CONTRIBUTOR: Arnaud DI FRANCO <arnaud.difranco@gmail.com>
4             $Bio::FastParsers::Hmmer::VERSION = '0.201110';
5 7     7   56 use strict;
  7         20  
  7         260  
6 7     7   41 use warnings;
  7         17  
  7         239  
7              
8 7     7   3181 use Bio::FastParsers::Hmmer::Model;
  7         28  
  7         310  
9 7     7   4159 use Bio::FastParsers::Hmmer::Standard;
  7         30  
  7         325  
10 7     7   4844 use Bio::FastParsers::Hmmer::Table;
  7         35  
  7         323  
11 7     7   4575 use Bio::FastParsers::Hmmer::DomTable;
  7         32  
  7         358  
12              
13             1;
14              
15             __END__
16              
17             =pod
18              
19             =head1 NAME
20              
21             Bio::FastParsers::Hmmer - Classes for parsing HMMER output
22              
23             =head1 VERSION
24              
25             version 0.201110
26              
27             =head1 SYNOPSIS
28              
29             # see Bio::FastParsers::Hmmer::Model
30             # see Bio::FastParsers::Hmmer::Standard
31             # see Bio::FastParsers::Hmmer::Table;
32             # see Bio::FastParsers::Hmmer::DomTable;
33              
34             =head1 DESCRIPTION
35              
36             Parsers for the HMMER model and three output formats are available: standard,
37             tabular and domain-wise tabular.
38              
39             =head1 AUTHOR
40              
41             Denis BAURAIN <denis.baurain@uliege.be>
42              
43             =head1 CONTRIBUTOR
44              
45             =for stopwords Arnaud DI FRANCO
46              
47             Arnaud DI FRANCO <arnaud.difranco@gmail.com>
48              
49             =head1 COPYRIGHT AND LICENSE
50              
51             This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
52              
53             This is free software; you can redistribute it and/or modify it under
54             the same terms as the Perl 5 programming language system itself.
55              
56             =cut